Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023129.1 Corchorus olitorius cultivar O-4 contig23162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20760

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2693--2725
16
2.0
17
88
5
50
60
0
9
30
1.27
3890--4245
120
3.0
117
88
5
554
34
23
7
33
1.84
3890--4245
118
3.0
117
88
5
554
34
23
7
33
1.84
5654--5703
21
2.3
21
83
10
57
38
8
14
40
1.75
5853--5907
22
2.5
22
96
0
101
40
5
14
40
1.69
5923--5998
22
3.5
22
83
0
98
35
9
15
39
1.80
5872--6035
22
7.7
21
72
17
83
35
9
14
40
1.79
11113--11145
7
5.0
7
85
14
52
42
15
30
12
1.83
11531--11696
85
2.0
81
87
4
233
36
18
20
25
1.95
12925--12951
7
3.9
7
100
0
54
40
14
14
29
1.86
14070--14101
16
2.0
16
93
0
55
28
18
6
46
1.73

Tables:   1

The End!