Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023133.1 Corchorus olitorius cultivar O-4 contig23166, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34


Found at i:387 original size:15 final size:16

Alignment explanation


    Indices: 356--395  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

        346 TTACTCTGCT

                      *     
        356 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAATTTAA

                            
        372 TTGTTTTC-AATTTAA
          1 TTGTTTTCTAATTTAA

                     
        387 TTGTTTTCT
          1 TTGTTTTCT

        396 GTCAATCTCT


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  15   14  0.64
  16    8  0.36

ACGTcount: A:0.17, C:0.07, G:0.10, T:0.65


Consensus pattern (16 bp):   
TTGTTTTCTAATTTAA
Done.