Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023135.1 Corchorus olitorius cultivar O-4 contig23168, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2975
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:2637 original size:25 final size:25

Alignment explanation


    Indices: 2603--2654  Score: 77
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       2593 ATTAACCAAA

                              *      
       2603 ACGGCACCGTTTAGTGCAGACTCAG
          1 ACGGCACCGTTTAGTGCAAACTCAG

                 *              *    
       2628 ACGGCGCCGTTTAGTGCAAATTCAG
          1 ACGGCACCGTTTAGTGCAAACTCAG

              
       2653 AC
          1 AC

       2655 CTGATCCGGT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21


Consensus pattern (25 bp):   
ACGGCACCGTTTAGTGCAAACTCAG
Done.