Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01023140.1 Corchorus olitorius cultivar O-4 contig23173, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64627
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Found at i:4512 original size:9 final size:9
Alignment explanation
Indices: 4498--4555 Score: 54
Period size: 8 Copynumber: 6.8 Consensus size: 9
4488 AACCTTCTGA
4498 TTTTTCATT
1 TTTTTCATT
4507 TTTTTC-TT
1 TTTTTCATT
4515 TTTTCTCA--
1 TTTT-TCATT
4523 TTTTTC-TT
1 TTTTTCATT
*
4531 TTCTTC-TT
1 TTTTTCATT
4539 TTTTTCATT
1 TTTTTCATT
4548 TTTCTTCA
1 TTT-TTCA
4556 AATTTTGTCC
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
7 2 0.05
8 22 0.54
9 13 0.32
10 4 0.10
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTCATT
Found at i:4516 original size:8 final size:8
Alignment explanation
Indices: 4498--4550 Score: 54
Period size: 9 Copynumber: 6.4 Consensus size: 8
4488 AACCTTCTGA
4498 TTTTTCATT
1 TTTTTC-TT
4507 TTTTTC-T
1 TTTTTCTT
*
4514 TTTTTCTCA
1 TTTTTCT-T
4523 TTTTTCTT
1 TTTTTCTT
*
4531 TTCTTCTT
1 TTTTTCTT
4539 TTTTTCATT
1 TTTTTC-TT
4548 TTT
1 TTT
4551 CTTCAAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
7 7 0.19
8 12 0.32
9 18 0.49
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTCTT
Found at i:4519 original size:16 final size:15
Alignment explanation
Indices: 4498--4553 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 15
4488 AACCTTCTGA
4498 TTTTTCATTTTTTTCT
1 TTTTTC-TTTTTTTCT
*
4514 TTTTTCTCATTTTTCT
1 TTTTTCT-TTTTTTCT
*
4530 TTTCTTCTTTTTTTCA
1 TTT-TTCTTTTTTTCT
4546 TTTTTCTT
1 TTTTTCTT
4554 CAAATTTTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 6 0.17
16 25 0.71
17 4 0.11
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTCTTTTTTTCT
Found at i:4525 original size:25 final size:24
Alignment explanation
Indices: 4492--4553 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
4482 TCTTTTAACC
* *
4492 TTCTGATTTTTCATTTTTTTCTTTT
1 TTCTCATTTTTC-TTTTCTTCTTTT
4517 TTCTCATTTTTCTTTTCTTCTTTT
1 TTCTCATTTTTCTTTTCTTCTTTT
4541 TT-TCATTTTTCTT
1 TTCTCATTTTTCTT
4554 CAAATTTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 11 0.31
24 13 0.37
25 11 0.31
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.76
Consensus pattern (24 bp):
TTCTCATTTTTCTTTTCTTCTTTT
Found at i:11229 original size:76 final size:76
Alignment explanation
Indices: 11078--11222 Score: 179
Period size: 76 Copynumber: 1.9 Consensus size: 76
11068 ATAAGGGCCC
* * *
11078 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGGACCCAGGT
1 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGCACCCAGAT
11143 GGGCAGTGTCA
66 GGGCAGTGTCA
* * * *
11154 CGACTCCAGCTGGGTGCCCACATGGTTTGTC-TGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
1 CGACTCCACCTGGGCGCCCACATGG-TTGCCTTG-AGCACCCATGTGGTTT-GCCTGAGCACCCA
11216 GATGGGC
63 GATGGGC
11223 TATGTCATGG
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
75 4 0.07
76 49 0.83
77 6 0.10
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (76 bp):
CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGCACCCAGAT
GGGCAGTGTCA
Found at i:17031 original size:21 final size:21
Alignment explanation
Indices: 17002--17051 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
16992 CTTAGGCAAT
*
17002 TCCAGTGAGCTTGAAACCTTC
1 TCCAATGAGCTTGAAACCTTC
* *
17023 TCCAATGAGCTTGGAACCTTG
1 TCCAATGAGCTTGAAACCTTC
17044 TCCAATGA
1 TCCAATGA
17052 TCTCCTAGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (21 bp):
TCCAATGAGCTTGAAACCTTC
Found at i:19433 original size:21 final size:21
Alignment explanation
Indices: 19384--19434 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
19374 AAGACACGGA
*
19384 TGACCGGGCAGGCGGCTCGGC
1 TGACCGGGCAGGCGACTCGGC
** *
19405 TGGTCGGGCAGGTGACTCGGC
1 TGACCGGGCAGGCGACTCGGC
19426 TGACCGGGC
1 TGACCGGGC
19435 CATGGCTGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.10, C:0.29, G:0.47, T:0.14
Consensus pattern (21 bp):
TGACCGGGCAGGCGACTCGGC
Found at i:23684 original size:19 final size:17
Alignment explanation
Indices: 23648--23687 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
23638 CTCTTGAAAT
*
23648 AATTCTTCAAAGTCTTC
1 AATTCTTCAAAATCTTC
23665 AATTCTTCAAATTATCTTC
1 AATTCTTCAAA--ATCTTC
23684 AATT
1 AATT
23688 AATCTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 11 0.55
19 9 0.45
ACGTcount: A:0.33, C:0.20, G:0.03, T:0.45
Consensus pattern (17 bp):
AATTCTTCAAAATCTTC
Found at i:27504 original size:435 final size:436
Alignment explanation
Indices: 26623--27478 Score: 1046
Period size: 435 Copynumber: 2.0 Consensus size: 436
26613 TACTTTTTAG
* * * *
26623 AATTGAAACATGAAAATTAGCTTTTGAGTCTTTCATGAAAGTTGTAGATCATATAATTACCTTTT
1 AATTAAAACATAAAAATTAGCTTTTGAGTCCTTCATAAAAGTTGTAGATCATATAATTACCTTTT
* * * * * * *
26688 AATAGACACCTGAATTATCTTAATTGAACAAATAGAACAAAGAAAATAACAAAAAATGAAGCGTT
66 AATAGACACATGAATCAACTTAATCGAACAAATAGAACAAAGAAAAT-A-AAAAAATAAAGCATA
* *
26753 AAATCGAATAAGATAGAATTTGTAAATGACTAAGTAGCATAAAATATAAAAGAATGAGGGTCATT
129 AAATCGAATAAGATAGAATTTGTAAAGGACTAAGTAGCATAAAATAGAAAAGAATGAGGGTCATT
* * *
26818 TGATAACTAATTCAAATAAGAAAATATTTCTTAATGGATATCTTGAAACATAAAAATTCCCTTTT
194 TGATAAATAATCCAAATAAGAAAATATTTCTTAATGGAGATCTTGAAACATAAAAATTCCCTTTT
* * * * *
26883 GACCCCTTCATGAAACTCATAGATCAAATTAATTTTCGGGTTCTTCATGAAAGTTGTAGATCATA
259 GAACCCTTCATGAAACTCATAGATCAAATTAACTTTCGGGTCCTTCATGAAAGTTGCAAATCATA
* * * * * * * *
26948 CAGTAATCTTTTAACCGATACTTGAATAACTTTAATCGGACATGTAGATCGAAAATTATATGGTA
324 CAGTAACCTTTTAACCGACACTTCAATAACTTCAATCGGACATGTAGATCAAAAATGATACGATA
* * * * * **
27013 TTTAATAGACCAACAATCGAAACGACCAAATTTATGAAGCATTGTTTT
389 TTAAATAGACCAACAATCAAAACCACAAAATATATGAAGCATCATTTT
**
27061 GAATTAAAACATAAAAATTTTCTTTTGA-TCCTTCATAAAAGTTGTAGATCATGA-AATTACCTT
1 -AATTAAAACATAAAAATTAGCTTTTGAGTCCTTCATAAAAGTTGTAGATCAT-ATAATTACCTT
* * *
27124 TTAATAGACACATGAATCAACTTAATCGGACAAATAGAA-AAA-AGAAT-AAAAAATAAATCATA
64 TTAATAGACACATGAATCAACTTAATCGAACAAATAGAACAAAGAAAATAAAAAAATAAAGCATA
* * *
27186 AAAGTTCGATTAAGATAGAATTTGTAAAGGACTAAGTAGTATAAAGTAGAAAA-ATATGAGGGTC
129 AAA--TCGAATAAGATAGAATTTGTAAAGGACTAAGTAGCATAAAATAGAAAAGA-ATGAGGGTC
* * *
27250 ATTTGATAAATAATCCAAATAAGAAAATTTTTGTTAATGGAGATCTTGAAGCATAAAAATTCCCT
191 ATTTGATAAATAATCCAAATAAGAAAATATTTCTTAATGGAGATCTTGAAACATAAAAATTCCCT
* * *
27315 TTTGAACTCTTCATGAAACTCGTAGATCAAATTTAGCTTTCGGGTCCTTCATGAAAGTTGCAAAT
256 TTTGAACCCTTCATGAAACTCATAGATCAAA-TTAACTTTCGGGTCCTTCATGAAAGTTGCAAAT
* * * *
27380 CATGCAAG-AACCTTTTAACTGACACTTCAATAACTTCAATCGGACCTGTGGA-CAAAAAATGAT
320 CATAC-AGTAACCTTTTAACCGACACTTCAATAACTTCAATCGGACATGTAGATC-AAAAATGAT
* *
27443 ACGATATTAAATTGACCGGA-AATCAAAACCACAAAA
383 ACGATATTAAATAGACC-AACAATCAAAACCACAAAA
27479 AATGATATGA
Statistics
Matches: 356, Mismatches: 53, Indels: 19
0.83 0.12 0.04
Matches are distributed among these distances:
433 14 0.04
434 1 0.00
435 140 0.39
436 106 0.30
437 6 0.02
438 65 0.18
439 24 0.07
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.30
Consensus pattern (436 bp):
AATTAAAACATAAAAATTAGCTTTTGAGTCCTTCATAAAAGTTGTAGATCATATAATTACCTTTT
AATAGACACATGAATCAACTTAATCGAACAAATAGAACAAAGAAAATAAAAAAATAAAGCATAAA
ATCGAATAAGATAGAATTTGTAAAGGACTAAGTAGCATAAAATAGAAAAGAATGAGGGTCATTTG
ATAAATAATCCAAATAAGAAAATATTTCTTAATGGAGATCTTGAAACATAAAAATTCCCTTTTGA
ACCCTTCATGAAACTCATAGATCAAATTAACTTTCGGGTCCTTCATGAAAGTTGCAAATCATACA
GTAACCTTTTAACCGACACTTCAATAACTTCAATCGGACATGTAGATCAAAAATGATACGATATT
AAATAGACCAACAATCAAAACCACAAAATATATGAAGCATCATTTT
Found at i:30361 original size:17 final size:18
Alignment explanation
Indices: 30339--30372 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
30329 TGTGAGATTA
30339 AAATAAAT-CCAAAGAAG
1 AAATAAATCCCAAAGAAG
30356 AAATAAATCCCAAAGAA
1 AAATAAATCCCAAAGAA
30373 CAACCAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.65, C:0.15, G:0.09, T:0.12
Consensus pattern (18 bp):
AAATAAATCCCAAAGAAG
Found at i:31043 original size:181 final size:180
Alignment explanation
Indices: 30739--31100 Score: 616
Period size: 181 Copynumber: 2.0 Consensus size: 180
30729 TTGGTGGAAG
* * * *
30739 AAGAAAGGAGAAGAAAGGGGAAGAATACCTCAACTCTCAGGCATTCGGATCCGTCGACGGTGGGC
1 AAGAAAGGAAAAGAAAGGGCAAGAATACCTCAACTCTCAGGCATTCAGATCAGTCGACGGTGGGC
* *
30804 GAACGGAGGGGCGACCATCGTGGATTTGGAAATGAAGGAGGTGGAGGGAGAGAGTGAAAGAGAGT
66 GAACGGAGGGGCGACCATCGTGGATTTGAAAATGAAGGAGGCGGAGGGAGAGAGTGAAAGAGAGT
* *
30869 TGAGAGAGCTCGAGCAGAAGAGGGAATTAGGGATTAGGTTTATGAAAATTT
131 TGAGAGAGCTCGAGCAAAAGAGGGAATTAGGGATTAGCTTTA-GAAAATTT
* *
30920 AAGAAAGGAAAAGAAAGGGCAAGAATACCTTAAGTCTCAGGCATTCAGATCAGTCGACGGTGGGC
1 AAGAAAGGAAAAGAAAGGGCAAGAATACCTCAACTCTCAGGCATTCAGATCAGTCGACGGTGGGC
*
30985 GAATGGAGGGGCGACCATCGTGGATTTGAAAATGAAGGAGGCGGAGGGAGAGAGTGAAAGAGAGT
66 GAACGGAGGGGCGACCATCGTGGATTTGAAAATGAAGGAGGCGGAGGGAGAGAGTGAAAGAGAGT
31050 TGAGAGAGCTCGAGCAAAAGAGGGAATTAGGGATTAGCTTTAGAAAATTT
131 TGAGAGAGCTCGAGCAAAAGAGGGAATTAGGGATTAGCTTTAGAAAATTT
31100 A
1 A
31101 GGAATTTTTA
Statistics
Matches: 170, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
180 9 0.05
181 161 0.95
ACGTcount: A:0.35, C:0.11, G:0.36, T:0.17
Consensus pattern (180 bp):
AAGAAAGGAAAAGAAAGGGCAAGAATACCTCAACTCTCAGGCATTCAGATCAGTCGACGGTGGGC
GAACGGAGGGGCGACCATCGTGGATTTGAAAATGAAGGAGGCGGAGGGAGAGAGTGAAAGAGAGT
TGAGAGAGCTCGAGCAAAAGAGGGAATTAGGGATTAGCTTTAGAAAATTT
Found at i:33416 original size:21 final size:21
Alignment explanation
Indices: 33390--33430 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
33380 TTGAAGCCCT
*
33390 ATTGGATAC-AAGTGGTACTAA
1 ATTGGAT-CTAAGTAGTACTAA
33411 ATTGGATCTAAGTAGTACTA
1 ATTGGATCTAAGTAGTACTA
33431 GGGTTTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.32
Consensus pattern (21 bp):
ATTGGATCTAAGTAGTACTAA
Found at i:40213 original size:2 final size:2
Alignment explanation
Indices: 40208--40252 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
40198 GCGCGCGCGC
*
40208 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT TT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
40250 GT G
1 GT G
40253 AGGATTTTCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
GT
Found at i:46135 original size:24 final size:26
Alignment explanation
Indices: 46102--46171 Score: 81
Period size: 28 Copynumber: 2.7 Consensus size: 26
46092 TCATTGATAT
* *
46102 AAAAATTTATTCTAACTT-CTGC-CA
1 AAAAAATTATTCTAACTTACTGCAAA
*
46126 AAAAAATTATTCTAACTTATAGTGCAAA
1 AAAAAATTATTCTAAC-T-TACTGCAAA
46154 AAAAAATTATTCTAACTT
1 AAAAAATTATTCTAACTT
46172 TTTCTCCCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
24 15 0.38
25 1 0.03
26 2 0.05
27 4 0.10
28 17 0.44
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (26 bp):
AAAAAATTATTCTAACTTACTGCAAA
Found at i:52956 original size:15 final size:16
Alignment explanation
Indices: 52936--52968 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
52926 TAAGAAGAAT
52936 AATTAAA-AAGAAAAC
1 AATTAAACAAGAAAAC
*
52951 AATTAAACTAGAAAAC
1 AATTAAACAAGAAAAC
52967 AA
1 AA
52969 AGCAGGGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.70, C:0.09, G:0.06, T:0.15
Consensus pattern (16 bp):
AATTAAACAAGAAAAC
Found at i:55373 original size:27 final size:27
Alignment explanation
Indices: 55338--55400 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
55328 CTAAAAAAAA
* *
55338 TTGCATTTTTGAAAAAAAAAATTGTTT
1 TTGCGTTTTTGAAAAAAAAAAGTGTTT
55365 TTGCGTTTTTGAAAAAAAAAAGTGTTT
1 TTGCGTTTTTGAAAAAAAAAAGTGTTT
55392 TTGCGTTTT
1 TTGCGTTTT
55401 CCAAAATTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.46
Consensus pattern (27 bp):
TTGCGTTTTTGAAAAAAAAAAGTGTTT
Found at i:55412 original size:27 final size:27
Alignment explanation
Indices: 55349--55406 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
55339 TGCATTTTTG
* **
55349 AAAAAAAAAATTGTTTTTGCGTTTTTG
1 AAAAAAAAAAGTGTTTTTGCGTTTTCC
55376 AAAAAAAAAAGTGTTTTTGCGTTTTCC
1 AAAAAAAAAAGTGTTTTTGCGTTTTCC
55403 AAAA
1 AAAA
55407 TTAAAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (27 bp):
AAAAAAAAAAGTGTTTTTGCGTTTTCC
Found at i:58525 original size:17 final size:18
Alignment explanation
Indices: 58503--58538 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
58493 AAAGGGTAGT
58503 TAAAAA-AAATGTTTTCA
1 TAAAAAGAAATGTTTTCA
*
58520 TAAAAAGAACTGTTTTCA
1 TAAAAAGAAATGTTTTCA
58538 T
1 T
58539 GCATGAGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.36
Consensus pattern (18 bp):
TAAAAAGAAATGTTTTCA
Found at i:62113 original size:19 final size:18
Alignment explanation
Indices: 62080--62115 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
62070 TTGAAATAAT
62080 TCTTCAAAAATCTTCAAG
1 TCTTCAAAAATCTTCAAG
*
62098 TCTTCAAATTATCTTCAA
1 TCTTCAAA-AATCTTCAA
62116 ATGGTCTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.36, C:0.22, G:0.03, T:0.39
Consensus pattern (18 bp):
TCTTCAAAAATCTTCAAG
Found at i:64279 original size:27 final size:28
Alignment explanation
Indices: 64217--64291 Score: 98
Period size: 27 Copynumber: 2.7 Consensus size: 28
64207 AGGGCCATCT
* *
64217 AGGGGAATTTTGGGTCATTTTCAAAATCC
1 AGGGGCATTTT-GGTCATTTGCAAAATCC
* *
64246 AGGGGCATTTTGGTCATTTGC-ATATTC
1 AGGGGCATTTTGGTCATTTGCAAAATCC
64273 AGGGGCATTTTGGTCATTT
1 AGGGGCATTTTGGTCATTT
64292 TCAGTTCACT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 23 0.55
28 9 0.21
29 10 0.24
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.39
Consensus pattern (28 bp):
AGGGGCATTTTGGTCATTTGCAAAATCC
Found at i:64448 original size:74 final size:75
Alignment explanation
Indices: 64324--64485 Score: 283
Period size: 74 Copynumber: 2.2 Consensus size: 75
64314 TAGCTAATTC
* *
64324 TTTTTTTAG-TCATCTAAATTGCATTTTTGAAAAAACCCAAAAAAATCTTGATAGGCGCCTTTGG
1 TTTTTATAGTTCATCTAAATTGCATTTTTGAAAAAACCCAAAAAAATCTTGATAGGCGCCTTTGC
64388 CATTTCTGCA
66 CATTTCTGCA
64398 TTTTTATAGTTCATCTAAATTGCATTTTTG-AAAAACCCAAAAAAATCTTGATAGGCGCCTTTGC
1 TTTTTATAGTTCATCTAAATTGCATTTTTGAAAAAACCCAAAAAAATCTTGATAGGCGCCTTTGC
64462 CATTTCTGCA
66 CATTTCTGCA
64472 TTTTTCATAGTTCA
1 TTTTT-ATAGTTCA
64486 GATTCATTTA
Statistics
Matches: 84, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
74 56 0.67
75 28 0.33
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (75 bp):
TTTTTATAGTTCATCTAAATTGCATTTTTGAAAAAACCCAAAAAAATCTTGATAGGCGCCTTTGC
CATTTCTGCA
Done.