Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023142.1 Corchorus olitorius cultivar O-4 contig23175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30317

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6059--6096
21
1.9
21
89
10
62
31
13
7
47
1.71
6450--6482
16
2.1
16
88
5
50
69
9
6
15
1.34
7823--7858
18
1.9
18
88
5
54
36
22
2
38
1.69
12974--13041
21
3.2
21
72
2
64
17
22
42
17
1.89
17492--17517
11
2.4
11
100
0
52
69
7
15
7
1.35
20823--20857
16
2.2
16
89
0
52
2
11
34
51
1.53
21082--21128
22
2.1
22
81
14
53
53
6
6
34
1.52
21813--21891
23
3.4
23
89
0
113
7
22
44
25
1.79
24780--24814
6
5.8
6
100
0
70
14
51
34
0
1.42

Tables:   1

The End!