Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023147.1 Corchorus olitorius cultivar O-4 contig23180, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4161
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31


Found at i:1252 original size:22 final size:22

Alignment explanation


    Indices: 1210--1257  Score: 53
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       1200 CGACGGTTTG

                         *       *
       1210 CTTCCTCTTGAGTTGAAAATTT
          1 CTTCCTCTTGAGTCGAAAATTC

                             *     
       1232 CTTCCTCTT-AGTCGATTAATTC
          1 CTTCCTCTTGAGTCGA-AAATTC

                
       1254 CTTC
          1 CTTC

       1258 ACTTGAAATC


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  21    5  0.23
  22   17  0.77

ACGTcount: A:0.19, C:0.25, G:0.10, T:0.46


Consensus pattern (22 bp):   
CTTCCTCTTGAGTCGAAAATTC
Done.