Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002316.1 Corchorus olitorius cultivar O-4 contig02316, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 877

Length: 1462
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31


Found at i:642 original size:21 final size:21

Alignment explanation


    Indices: 616--791  Score: 259
    Period size: 21  Copynumber: 8.4  Consensus size: 21

        606 TGCTAGAGGT

                                  
        616 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                  
        637 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                  
        658 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                *
        679 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
        700 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
        721 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                                *
        742 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                           *     
        763 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
        784 TCATTGGA
          1 TCATTGGA

        792 ATTGCCTAAA


Statistics
Matches: 150,  Mismatches: 4, Indels: 2
        0.96            0.03        0.01

Matches are distributed among these distances:
  20    2  0.01
  21  148  0.99

ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.