Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023160.1 Corchorus olitorius cultivar O-4 contig23193, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5312
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:252 original size:23 final size:21

Alignment explanation


    Indices: 209--257  Score: 53
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        199 TTATACAATA

                         *       
        209 AAATATATATATATAATTATT
          1 AAATATATATATAAAATTATT

                      *            
        230 AAATATATATTTCAAAATATATT
          1 AAATATATATAT-AAAAT-TATT

            *    
        253 TAATA
          1 AAATA

        258 CCTCTCATCT


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  21   11  0.48
  22    4  0.17
  23    8  0.35

ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45


Consensus pattern (21 bp):   
AAATATATATATAAAATTATT
Done.