Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023166.1 Corchorus olitorius cultivar O-4 contig23199, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2022
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35


Found at i:784 original size:17 final size:19

Alignment explanation


    Indices: 752--789  Score: 62
    Period size: 17  Copynumber: 2.1  Consensus size: 19

        742 AAGTTCGTGC

                               
        752 TTGAAGACCATTTGAAGAT
          1 TTGAAGACCATTTGAAGAT

                               
        771 TTGAAGA-C-TTTGAAGAT
          1 TTGAAGACCATTTGAAGAT

              
        788 TT
          1 TT

        790 ATTCCAAGAG


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  17   11  0.58
  18    1  0.05
  19    7  0.37

ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37


Consensus pattern (19 bp):   
TTGAAGACCATTTGAAGAT
Done.