Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023170.1 Corchorus olitorius cultivar O-4 contig23203, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76673

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1002--1084
30
3.0
27
83
10
112
49
3
3
43
1.37
3124--3166
22
2.0
22
81
9
52
20
9
25
44
1.81
3590--3632
13
3.4
12
83
6
50
62
11
0
25
1.29
7396--7431
19
1.9
18
88
5
54
41
2
22
33
1.68
15490--15551
28
2.3
27
86
8
81
70
0
20
8
1.12
16930--18071
54
21.3
54
79
9
638
27
18
21
32
1.96
16930--17398
163
2.9
160
81
4
577
25
17
21
35
1.95
16930--18142
163
7.5
159
77
11
570
27
18
21
32
1.96
17413--18191
323
2.4
321
85
6
995
28
18
21
31
1.97
17425--18189
54
14.3
52
81
8
781
28
18
21
31
1.97
18161--18436
35
7.9
35
92
0
453
30
14
19
35
1.91
21595--21737
73
2.0
73
100
0
286
20
11
16
51
1.74
28962--29009
22
2.2
22
88
3
71
66
4
12
16
1.39
32397--32645
115
2.2
115
92
0
417
32
14
6
46
1.69
33889--33949
22
2.8
22
85
7
88
37
8
11
42
1.71
33890--33963
22
3.4
21
79
7
76
37
9
10
41
1.73
37707--37737
2
15.0
2
93
6
53
3
48
0
48
1.17
37710--37734
13
1.9
13
100
0
50
4
48
0
48
1.20
37708--37736
15
1.9
15
100
0
58
3
48
0
48
1.18
38160--38214
3
18.3
3
92
0
92
61
0
38
0
0.96
38352--38391
18
2.2
18
86
4
53
77
0
20
2
0.88
38332--38391
19
3.2
19
80
2
68
80
0
15
5
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38374--38433
31
2.0
29
83
6
75
68
0
18
13
1.21
40600--40632
14
2.4
14
100
0
66
51
6
0
42
1.26
47451--47509
16
3.7
15
77
8
64
44
38
13
3
1.61
47557--47648
30
3.0
30
98
1
175
30
13
3
53
1.55
53879--53922
21
2.1
21
83
8
54
22
4
9
63
1.42
57274--57376
51
2.0
51
81
3
118
20
21
13
44
1.85
64006--64057
24
2.1
25
82
7
61
44
36
0
19
1.51
66542--66575
17
2.0
17
88
11
52
32
5
17
44
1.73
66877--66909
16
2.0
17
88
5
50
69
0
27
3
1.03
69161--69205
21
2.1
21
88
8
65
11
40
11
37
1.76
69377--69474
32
3.0
33
82
5
119
13
28
35
22
1.92
73849--73899
21
2.4
21
77
6
50
25
27
27
19
1.99
76289--76337
23
2.2
21
82
7
53
55
4
4
36
1.38

Tables:   1

The End!