Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023184.1 Corchorus olitorius cultivar O-4 contig23217, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26248

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
582--620
20
2.0
20
100
0
78
41
5
41
12
1.65
2360--2392
8
4.1
8
88
11
50
84
0
3
12
0.72
3012--3137
41
3.1
41
87
2
173
26
15
11
47
1.78
5171--5213
21
2.2
20
84
16
54
51
18
11
18
1.76
11933--12009
20
3.9
20
69
20
63
57
19
7
15
1.63
14103--14152
22
2.3
22
92
0
82
50
18
18
14
1.79
14511--14611
28
3.6
28
90
0
148
38
25
15
19
1.92
14882--15447
102
5.5
102
92
0
943
28
25
11
34
1.91
15503--15690
50
3.8
50
98
0
358
26
13
29
30
1.94
17782--17813
12
2.7
12
95
0
55
31
6
18
43
1.75
18101--18137
14
2.9
12
85
14
56
35
16
5
43
1.71
18107--18146
14
2.8
14
92
3
62
32
15
7
45
1.74
18110--18160
15
3.5
15
89
2
68
37
13
7
41
1.74
21802--21878
20
3.9
20
69
20
63
57
19
7
15
1.63
26205--26229
11
2.3
11
100
0
50
64
28
0
8
1.22

Tables:   1

The End!