Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023185.1 Corchorus olitorius cultivar O-4 contig23218, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21050

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1655--1679
12
2.1
12
100
0
50
8
0
0
92
0.40
2923--3048
40
3.2
40
80
8
136
26
4
0
68
1.15
2958--3048
37
2.6
33
77
14
92
26
3
1
69
1.11
2949--3048
25
4.2
25
73
16
70
26
4
1
69
1.13
2958--3044
30
2.8
33
76
16
87
26
3
1
68
1.12
2942--3067
58
2.2
58
77
11
134
26
5
1
65
1.23
3055--3111
24
2.4
24
88
5
80
22
17
3
56
1.56
12353--12435
12
7.2
13
73
20
69
44
0
1
54
1.08
12352--12433
19
4.3
20
73
14
68
45
0
1
53
1.08
12350--12427
30
2.7
29
78
11
81
43
0
1
55
1.08
17616--17737
22
5.5
22
69
8
86
36
15
12
36
1.85
17751--17834
23
3.7
23
85
3
107
41
13
5
39
1.68
17780--18556
22
35.5
22
68
15
260
36
16
9
37
1.81
18204--18264
24
2.7
22
80
7
59
45
16
3
34
1.63
18407--18461
28
1.9
29
85
10
78
40
5
9
45
1.59
18561--18907
22
15.4
22
68
10
137
37
15
9
37
1.81
18481--18634
78
2.0
78
85
2
211
35
17
8
38
1.80
18451--18686
123
1.9
122
83
8
300
37
16
7
38
1.78
18875--18923
21
2.3
21
85
0
62
40
8
12
38
1.72
19005--19046
21
2.0
22
95
4
77
38
19
14
28
1.90
19679--19800
22
5.7
22
70
5
79
31
10
15
41
1.81
19684--19800
42
2.8
42
74
11
114
33
11
14
41
1.81

Tables:   1

The End!