Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023187.1 Corchorus olitorius cultivar O-4 contig23220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16427

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
774--1316
35
15.4
35
88
3
696
26
13
18
41
1.88
774--1316
70
7.7
70
90
2
775
26
13
18
41
1.88
4856--5210
22
16.0
22
67
15
97
39
10
16
33
1.83
5095--5210
22
5.3
22
77
2
108
41
9
16
32
1.80
5232--5475
115
2.1
115
98
0
470
34
9
20
35
1.85
5580--5677
38
2.6
38
90
0
151
37
9
20
32
1.84
5440--5966
22
24.5
22
69
11
216
38
9
16
35
1.81
5819--5904
45
1.9
45
83
4
111
33
11
15
39
1.83
5440--6040
22
27.9
22
68
13
200
38
9
15
35
1.81
6003--6050
22
2.2
22
88
0
69
54
8
10
27
1.63
6989--8026
439
2.4
435
83
5
1278
26
13
16
42
1.86
9818--9858
14
2.9
15
78
7
50
51
2
29
17
1.58
12427--12453
3
9.0
3
100
0
54
33
33
0
33
1.58
13127--13153
2
13.5
2
100
0
54
51
0
0
48
1.00
13466--13490
9
2.8
9
100
0
50
88
0
0
12
0.53
14654--14762
58
1.9
57
86
5
157
31
12
22
33
1.91

Tables:   1

The End!