Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023190.1 Corchorus olitorius cultivar O-4 contig23223, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25307

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66--156
41
2.2
41
88
0
137
38
19
18
23
1.93
611--653
22
2.0
22
90
0
68
20
9
16
53
1.70
2587--2693
39
2.8
39
86
8
157
50
8
14
27
1.71
6417--6475
14
4.3
14
87
10
70
38
6
15
38
1.74
8290--8700
105
3.9
105
78
5
418
21
20
18
38
1.93
8320--8700
70
5.4
70
81
3
406
21
21
18
38
1.93
8290--8700
35
11.7
35
77
6
368
21
20
18
38
1.93
8768--8812
16
2.8
16
86
6
56
28
24
4
42
1.74
8753--8812
24
2.5
24
81
7
61
28
25
5
41
1.76
8859--9087
50
4.5
50
86
3
307
27
17
20
34
1.95
8862--9087
102
2.2
100
87
3
319
27
17
21
34
1.95
9103--9258
54
2.9
54
87
0
215
29
16
19
35
1.93
9252--9609
35
10.2
35
85
2
468
30
17
22
29
1.97
9580--9694
42
2.7
42
89
0
167
29
17
28
24
1.97
9656--9862
89
2.3
88
82
7
242
28
14
25
30
1.95
15898--15937
15
2.6
15
88
4
53
15
10
10
65
1.48
15911--15940
15
2.0
15
100
0
60
13
13
6
66
1.43
16698--16737
15
2.6
15
88
4
53
15
7
10
67
1.41
16711--16739
15
1.9
15
100
0
58
13
6
6
72
1.26
21192--21218
9
3.0
9
100
0
54
0
0
22
77
0.76
23246--23275
3
10.0
3
100
0
60
66
33
0
0
0.92
23283--23342
14
4.3
14
85
8
70
38
6
16
38
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23624--23648
12
2.1
12
100
0
50
48
16
8
28
1.74
24340--24443
27
3.9
27
94
0
163
23
15
25
36
1.93
24584--24630
22
2.1
23
92
4
78
21
21
12
44
1.85

Tables:   1

The End!