Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023194.1 Corchorus olitorius cultivar O-4 contig23227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12394

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1068--1103
19
1.9
18
88
5
54
27
22
8
41
1.82
2157--2656
116
4.3
117
89
2
731
33
17
17
31
1.93
2157--2676
155
3.3
155
88
4
746
33
17
17
31
1.93
2157--2656
39
12.9
39
89
2
731
33
17
17
31
1.93
2679--2728
16
3.0
16
79
5
55
44
6
20
30
1.75
2765--2893
24
5.0
24
71
15
96
41
7
20
30
1.81
2763--2820
8
7.2
8
78
0
53
44
5
20
29
1.73
2699--2941
82
3.0
82
97
0
450
40
10
21
27
1.86
2845--2902
8
7.2
8
78
0
53
44
5
20
29
1.73
2848--2900
24
2.2
24
89
0
79
41
5
22
30
1.77
2871--3158
56
5.3
56
85
9
389
42
11
21
25
1.86
3041--3134
46
2.0
46
100
0
188
38
12
23
25
1.90
3108--3190
42
2.0
42
90
0
130
39
13
20
26
1.89
3199--3427
8
32.1
7
66
23
88
46
3
19
30
1.68
3199--3426
14
16.9
14
68
25
88
46
3
19
30
1.68
3199--3383
22
8.6
21
75
16
118
45
3
19
31
1.66
3200--3466
36
7.4
35
73
16
131
45
4
20
29
1.71
3379--3452
22
3.4
21
75
17
53
44
6
21
27
1.77
3438--3531
49
1.9
49
86
4
136
41
4
21
32
1.72
3479--3541
22
2.9
22
79
6
74
42
3
19
34
1.67
4376--4575
50
4.0
50
88
3
298
36
12
16
35
1.86
4376--4575
99
2.0
100
91
4
325
36
12
16
35
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6084--6175
48
1.9
48
90
0
148
31
14
8
45
1.75
8410--8801
52
7.1
51
75
14
320
38
13
16
30
1.88
8464--8561
34
2.9
34
87
7
153
35
17
16
30
1.92
8536--8801
53
5.1
52
84
8
340
38
12
17
31
1.87
9842--9879
18
2.1
18
90
0
58
60
18
7
13
1.56

Tables:   1

The End!