Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023196.1 Corchorus olitorius cultivar O-4 contig23229, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14226

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
800--836
11
2.9
14
76
23
53
29
0
8
62
1.24
1800--1841
14
2.6
16
78
21
52
14
23
0
61
1.32
1814--1840
14
1.9
14
100
0
54
14
25
0
59
1.36
3392--3479
46
1.9
46
97
0
167
26
4
17
52
1.63
5666--5726
27
2.3
27
82
0
68
31
22
11
34
1.90
7839--7877
21
1.9
19
90
10
60
30
0
20
48
1.50
7839--7885
21
2.2
21
84
3
58
31
0
19
48
1.49
7932--7957
2
13.0
2
100
0
52
50
0
50
0
1.00
9590--9733
21
7.2
21
72
8
97
46
9
9
34
1.68
10248--10278
16
1.9
16
93
0
53
58
0
9
32
1.31
10462--10491
13
2.3
13
94
0
51
53
0
0
46
1.00
13118--13173
26
2.2
25
78
15
60
35
1
8
53
1.43
13327--13370
18
2.4
18
84
3
52
43
2
11
43
1.53
13682--13716
11
3.2
11
91
0
61
80
17
2
0
0.84

Tables:   1

The End!