Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023199.1 Corchorus olitorius cultivar O-4 contig23232, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35849

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8778--8819
3
14.0
3
100
0
84
66
0
0
33
0.92
10511--10666
72
2.2
72
81
10
171
44
5
19
30
1.74
16652--16690
16
2.4
16
87
8
53
7
7
5
79
1.05
22708--22858
76
2.0
75
81
3
178
25
29
27
17
1.98
29609--29671
26
2.5
24
78
19
65
68
0
20
11
1.20
29991--30019
13
2.2
13
100
0
58
79
0
20
0
0.74
31024--31269
54
4.6
54
92
1
352
26
16
22
35
1.95
31178--31362
92
2.0
93
90
1
291
24
19
23
32
1.97
31276--31473
54
3.7
54
83
6
253
25
14
23
35
1.93
31124--31410
146
2.0
146
92
2
479
24
18
23
34
1.96
31276--31472
105
1.9
106
87
6
292
25
14
23
36
1.93
31288--31618
54
6.2
54
80
6
225
27
16
22
33
1.95
31447--31642
54
3.6
54
84
2
225
29
17
22
31
1.96
31559--31727
84
2.0
84
88
5
252
24
20
24
30
1.98
31643--31754
54
2.1
54
87
0
161
25
20
25
29
1.99
31760--32135
35
10.6
35
86
4
495
27
12
18
42
1.85
32101--32568
54
8.7
54
83
5
448
27
19
23
29
1.98
32101--32579
213
2.2
215
81
4
540
27
19
22
30
1.98
32101--32595
108
4.6
107
81
4
507
27
19
22
29
1.98
32101--32652
54
10.3
52
82
9
425
27
19
23
30
1.98

Tables:   1

The End!