Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023202.1 Corchorus olitorius cultivar O-4 contig23235, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39217

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5507--5537
2
15.5
2
100
0
62
51
0
0
48
1.00
17893--17990
28
3.5
27
74
12
90
41
28
14
15
1.86
21781--22193
157
2.6
159
91
3
641
30
16
15
37
1.91
24283--24330
20
2.3
21
85
3
62
18
6
6
68
1.32
24555--24654
39
2.8
35
71
14
96
37
5
12
46
1.63
27752--27793
21
2.0
21
85
0
57
26
47
16
9
1.77
28678--28712
16
2.1
16
89
10
52
51
5
5
37
1.50
34827--34854
11
2.5
11
100
0
56
7
17
21
53
1.67
37593--37628
19
1.9
18
88
5
54
41
8
22
27
1.82
38897--38939
22
2.0
22
81
9
52
16
9
11
62
1.53

Tables:   1

The End!