Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023205.1 Corchorus olitorius cultivar O-4 contig23238, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6360
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:2484 original size:38 final size:38

Alignment explanation


    Indices: 2433--2510  Score: 138
    Period size: 38  Copynumber: 2.1  Consensus size: 38

       2423 CTCGAGTACG

                                       *          
       2433 AACTTCTGGGAGCCTCTTTTAGACAAATCTTTTCCATA
          1 AACTTCTGGGAGCCTCTTTTAGACAAAGCTTTTCCATA

                                    *             
       2471 AACTTCTGGGAGCCTCTTTTAGACCAAGCTTTTCCATA
          1 AACTTCTGGGAGCCTCTTTTAGACAAAGCTTTTCCATA

              
       2509 AA
          1 AA

       2511 TACCCCCATA


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  38   38  1.00

ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35


Consensus pattern (38 bp):   
AACTTCTGGGAGCCTCTTTTAGACAAAGCTTTTCCATA
Done.