genome.fa.s23206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023206.1 Corchorus olitorius cultivar O-4 contig23239, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107221

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1632--1671	20	2.0	20	85	4	55	30	7	7	55	1.56
1623--1671	20	2.4	19	83	10	53	28	8	8	55	1.58
1946--1981	18	2.0	18	88	0	54	47	5	11	36	1.63
21581--21633	25	2.1	25	96	0	97	37	18	0	43	1.51
21849--21916	21	3.3	21	64	15	61	26	10	8	54	1.63
21829--21913	40	2.1	40	95	0	152	21	10	10	57	1.62
21910--21934	11	2.3	11	100	0	50	24	0	8	68	1.16
25168--25207	19	2.2	18	86	4	53	30	20	5	45	1.72
26215--26271	27	2.1	27	96	0	105	28	3	17	50	1.62
29137--29186	13	3.8	13	79	10	57	14	24	22	40	1.90
32330--32360	10	3.1	10	95	0	53	32	0	16	51	1.44
39537--39660	10	12.4	10	90	0	185	9	50	30	8	1.66
40016--40040	2	12.5	2	100	0	50	52	0	0	48	1.00
40161--40295	58	2.3	58	89	1	198	32	33	19	14	1.92
41046--41535	55	8.9	54	76	9	296	25	27	24	22	2.00
41046--41416	83	4.5	83	78	6	371	26	26	23	23	2.00
41157--41471	110	2.9	107	88	3	425	25	26	25	22	2.00
41378--41563	86	2.2	84	86	3	248	24	29	26	19	1.98
41415--41585	86	2.0	86	83	2	218	24	29	28	17	1.97
41435--41838	197	2.1	197	94	0	709	29	26	26	16	1.97
41072--41819	28	26.9	28	72	8	296	27	26	26	19	1.99
42067--42144	24	3.2	24	77	0	84	26	39	25	7	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44032--44095	21	3.3	21	66	28	59	51	10	15	21	1.74
44022--44097	37	2.1	37	97	0	143	47	11	13	27	1.77
44584--44728	70	2.1	70	94	0	254	46	21	6	26	1.75
45108--45163	22	2.9	18	80	20	60	44	8	10	35	1.71
47898--47928	2	16.0	2	93	6	55	51	0	0	48	1.00
50308--50394	44	2.0	44	97	0	165	51	2	11	34	1.51
51809--51846	20	1.9	20	88	0	58	13	7	13	65	1.46
55488--55559	27	2.6	28	82	2	83	20	16	23	38	1.92
58442--58520	41	1.9	41	86	0	113	30	15	12	41	1.84
61450--61491	6	7.0	6	81	10	50	88	9	2	0	0.61
61454--61485	9	3.6	9	91	0	55	90	6	3	0	0.53
61489--61530	19	2.2	20	86	4	59	54	2	23	19	1.55
61757--61798	22	1.9	22	95	0	75	28	11	16	42	1.84
65199--65440	128	1.9	129	92	0	405	18	18	17	45	1.86
65196--65473	61	4.5	61	85	7	378	18	18	18	43	1.88
68258--68298	22	2.0	20	90	9	64	73	0	21	4	1.02
79216--79313	35	2.8	35	80	4	101	21	22	18	37	1.94
79281--79490	56	3.8	56	93	0	348	25	21	10	42	1.84
79504--79611	8	13.6	8	70	19	59	32	20	2	44	1.66
79478--79553	22	3.6	22	78	14	72	31	19	2	46	1.64
79504--79605	30	3.5	28	85	8	116	32	19	2	45	1.66
79532--79645	22	5.2	22	78	14	103	35	21	2	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79584--79650	23	2.9	23	84	8	91	38	20	1	38	1.62
79552--79668	47	2.5	46	82	5	137	36	19	2	41	1.65
79574--79668	24	4.0	24	81	2	102	37	18	2	41	1.63
79725--79978	53	4.7	55	80	6	297	27	15	21	34	1.94
79725--79975	107	2.3	107	86	5	348	27	15	21	34	1.94
80137--80417	92	3.1	92	93	1	456	30	11	20	37	1.89
80135--80410	46	6.0	46	87	3	385	31	11	21	36	1.88
80977--81018	22	1.9	22	95	0	75	28	11	16	42	1.84
85985--86372	141	2.7	141	89	1	560	28	19	17	34	1.95
86432--86917	40	12.3	40	89	3	574	30	20	10	38	1.86
86432--86986	120	4.7	118	83	5	315	30	20	10	37	1.87
86435--86988	80	7.0	77	86	3	209	30	20	10	37	1.87
87275--87309	9	3.7	9	92	7	52	17	11	17	54	1.71
89681--89803	61	2.0	61	98	0	237	30	8	32	28	1.86
90266--90353	44	2.0	44	95	0	158	50	2	13	34	1.55
91854--91894	21	2.0	21	85	9	57	34	9	26	29	1.88
97107--97236	65	2.0	65	87	0	188	23	25	28	23	1.99
98806--98831	2	13.0	2	100	0	52	50	0	0	50	1.00
101200--101247	11	4.7	11	80	12	50	39	10	20	29	1.86
104892--104923	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1

The End!