Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023207.1 Corchorus olitorius cultivar O-4 contig23240, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25480

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
812--971
28
5.7
28
85
7
216
37
27
18
16
1.92
812--971
57
2.8
57
85
8
227
37
27
18
16
1.92
5019--5051
17
2.0
17
88
5
50
27
0
15
57
1.38
5916--5948
17
2.0
17
88
5
50
27
0
15
57
1.38
4280--6075
897
2.0
897
97
0
3403
32
17
21
28
1.96
8292--8345
16
3.4
16
82
7
58
5
16
42
35
1.72
8481--8527
13
3.8
12
78
13
51
55
4
0
40
1.19
8778--8849
31
2.3
31
75
17
78
61
8
4
26
1.43
9085--9117
2
17.0
2
93
6
59
48
0
0
51
1.00
9084--9116
11
3.1
11
91
8
59
45
0
0
54
0.99
9287--9332
16
2.9
16
86
0
74
8
15
39
36
1.78
14546--14648
39
2.7
38
73
16
113
45
15
13
25
1.83
14740--15161
30
13.9
30
89
2
621
49
17
13
19
1.79
15548--16417
71
12.3
71
80
3
894
42
17
19
20
1.89
15548--16431
107
8.3
106
85
2
912
42
18
19
20
1.90
15548--16417
35
24.5
35
79
3
898
42
17
19
20
1.89
25084--25161
1
78.0
1
74
0
66
87
10
2
0
0.65
25084--25155
19
3.8
19
89
5
110
87
11
1
0
0.61
25084--25161
31
2.6
30
86
10
97
87
10
2
0
0.65

Tables:   1

The End!