Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023209.1 Corchorus olitorius cultivar O-4 contig23242, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2264
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28


Found at i:1751 original size:20 final size:20

Alignment explanation


    Indices: 1726--1769  Score: 63
    Period size: 20  Copynumber: 2.2  Consensus size: 20

       1716 GCCATGCTGC

                      *          
       1726 TGCTTCGCAAGGCA-CCTTGT
          1 TGCTTCGCAAAGCAGCC-TGT

                                
       1746 TGCTTCGCAAAGCAGCCTGT
          1 TGCTTCGCAAAGCAGCCTGT

                
       1766 TGCT
          1 TGCT

       1770 GCCGCGACAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  20   20  0.91
  21    2  0.09

ACGTcount: A:0.16, C:0.30, G:0.25, T:0.30


Consensus pattern (20 bp):   
TGCTTCGCAAAGCAGCCTGT
Done.