Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023210.1 Corchorus olitorius cultivar O-4 contig23243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76494

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1228--1304
29
2.6
29
97
2
145
42
10
20
25
1.84
12343--12409
26
2.4
27
80
9
91
28
11
5
53
1.61
17675--17723
21
2.3
20
79
6
53
22
6
8
63
1.44
20279--20318
18
2.2
19
90
4
64
45
2
20
32
1.64
20893--20930
18
2.1
19
85
5
51
13
18
7
60
1.56
30453--30507
23
2.4
22
78
6
56
12
12
5
69
1.35
31390--31754
182
2.0
183
97
0
687
33
22
15
28
1.95
43214--43316
32
3.2
32
77
0
107
22
12
27
37
1.90
50167--50199
7
4.9
7
85
7
50
60
3
0
36
1.12
56108--56132
6
4.2
6
100
0
50
84
0
0
16
0.63
57283--58302
511
2.0
512
81
3
1212
27
15
24
32
1.95
59947--60085
68
2.0
68
100
0
278
30
18
28
22
1.97
67803--67828
4
6.5
4
100
0
52
26
0
23
50
1.50
68278--68332
26
2.1
27
93
3
94
40
20
23
16
1.91
73801--73835
16
2.2
16
89
0
52
20
25
20
34
1.96
76405--76438
18
1.9
17
88
5
50
38
14
20
26
1.91

Tables:   1

The End!