Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01023211.1 Corchorus olitorius cultivar O-4 contig23244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9595
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Found at i:1200 original size:35 final size:35
Alignment explanation
Indices: 1155--1232 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 35
1145 GAAACTGAAC
* *
1155 GGGAATTTTCCCAATTTGAAAACTTAAAAGTTGAT
1 GGGAACTTTCCCAATTTGAAAACTTAAAACTTGAT
*
1190 GGGAACTTTCCCAATTTGAAAACTTAAAACTTGGT
1 GGGAACTTTCCCAATTTGAAAACTTAAAACTTGAT
*
1225 GAGAACTT
1 GGGAACTT
1233 AGAAAAGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (35 bp):
GGGAACTTTCCCAATTTGAAAACTTAAAACTTGAT
Found at i:2019 original size:38 final size:38
Alignment explanation
Indices: 1968--2043 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 38
1958 AAGGCCCAAG
* *
1968 TCAAGAAACAAACCGTA-CTCAACTCATGAAATAAACCA
1 TCAAGAAACAAACC-AAGCCCAACTCATGAAATAAACCA
* *
2006 TCAAGAAATAAACCAAGCCCAAGTCATGAAATAAACCA
1 TCAAGAAACAAACCAAGCCCAACTCATGAAATAAACCA
2044 AGCCCATGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.51, C:0.25, G:0.09, T:0.14
Consensus pattern (38 bp):
TCAAGAAACAAACCAAGCCCAACTCATGAAATAAACCA
Found at i:2778 original size:20 final size:19
Alignment explanation
Indices: 2753--2797 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
2743 ACTGACAGGC
*
2753 ACCTAATTGACCAAATTTAA
1 ACCTAATGGACCAAA-TTAA
*
2773 ACCTAAGGGACCAAATTAA
1 ACCTAATGGACCAAATTAA
2792 A-CTAAT
1 ACCTAAT
2798 CCAGGGGCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 4 0.18
19 5 0.23
20 13 0.59
ACGTcount: A:0.47, C:0.20, G:0.09, T:0.24
Consensus pattern (19 bp):
ACCTAATGGACCAAATTAA
Found at i:5047 original size:25 final size:25
Alignment explanation
Indices: 5013--5065 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
5003 TACACTATTA
*
5013 AAAGATAAAGACCTGTCTGAGGTCG
1 AAAGATAAAGACCCGTCTGAGGTCG
5038 AAAGATAAAGACCCGTCTGAGGTCG
1 AAAGATAAAGACCCGTCTGAGGTCG
5063 AAA
1 AAA
5066 TTGAAACTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (25 bp):
AAAGATAAAGACCCGTCTGAGGTCG
Found at i:5106 original size:27 final size:27
Alignment explanation
Indices: 5019--6067 Score: 295
Period size: 32 Copynumber: 32.9 Consensus size: 27
5009 ATTAAAAGAT
*
5019 AAAGACCTGTCTGAGGTCGAAA--GAT
1 AAAGACCTGTCTGAGGTCGAAATTGAG
*
5044 AAAGACCCGTCTGAGGTCGAAATTGAAACTTGG
1 AAAGACCTGTCTGAGGTCGAAATTG--A----G
*
5077 AAAGACCTGTCCGAGGTCGAAATTGAG
1 AAAGACCTGTCTGAGGTCGAAATTGAG
* *
5104 AAAGACCTGTCCGAGGTCGGAATAAAACTGAG
1 AAAGACCTGTCTGAGGTC-G----AAATTGAG
*
5136 AAAGACCTGTCTGAGGTCGGAATTAAAAGCTGAG
1 AAAGACCTGTCTGAGGTC-G-----AAA-TTGAG
*
5170 AAAGACCTGTTTGAGGTCGAAATTAAACTGAG
1 AAAGACCTGTCTGAGGTCGAAA-T----TGAG
*
5202 AAAGACTTGTCTGAGGTCGAAATAAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAAT------TGAG
5235 AAAGACCTGTCTGAGGTCGAAATAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAAT-----TGAG
*
5267 AAAGACCTGCCTGAGGTCGAAATAAAACTGAG
1 AAAGACCTGTCTGAGGTCGAAAT-----TGAG
*
5299 AAAGACCTGTCTGAGGTC-AGAATTGAAATAT
1 AAAGACCTGTCTGAGGTCGA-AATTG----AG
5330 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAA-T------TGAG
* *
5364 AAAGACCTGTCTAAGGTCGGAATAAAACTGAG
1 AAAGACCTGTCTGAGGTC-G----AAATTGAG
* *
5396 AAAGACTTGTCTGAGGTCGGAATTAAAAGCTGAG
1 AAAGACCTGTCTGAGGTC-G-----AAA-TTGAG
5430 AAAGACCTGTCTGAGGTCGAAATTAAACTGAG
1 AAAGACCTGTCTGAGGTCGAAA-T----TGAG
5462 AAAGACCTGTCTGAGGTCGAAATAAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAAT------TGAG
* *
5495 AAAGACCTGTGTGGGGTCGAAATAAAACTGAG
1 AAAGACCTGTCTGAGGTCGAAAT-----TGAG
* * *
5527 AAAGACCTGTTTGAGGTCGGAATTGAAATAT
1 AAAGACCTGTCTGAGGTCGAAATTG----AG
*
5558 AAACACCTGTCTGAGGTCGAAATTAAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAA-T------TGAG
*
5592 AAAGACCTGTCTGAGGTCGGAATAAAACTGAG
1 AAAGACCTGTCTGAGGTC-G----AAATTGAG
5624 AAAGACCTGTCTGAGGTCGAAATTAAACTGAG
1 AAAGACCTGTCTGAGGTCGAAA-T----TGAG
* *
5656 AAAGACCTGTCTGAGGTCGGAATTGAAATAT
1 AAAGACCTGTCTGAGGTCGAAATTG----AG
5687 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTAAG
1 AAAGACCTGTCTGAGGTCGAAATT----G---AG
5721 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAA-T------TGAG
* *
5755 AAAGACCTGTTTGAGATCGAAATAAAACTGAG
1 AAAGACCTGTCTGAGGTCGAAAT-----TGAG
5787 AAAGACCTGTCTGAGGTCGAAATAAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAAT------TGAG
5820 AAAGACCTGTCTGAGGTCGAAATAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAAT-----TGAG
5852 AAAGACCTGTCTGAGGTCGAAATAAAACTGAG
1 AAAGACCTGTCTGAGGTCGAAAT-----TGAG
* *
5884 AAAGACCTGTCTGAGGTCGGAATTGAAATAT
1 AAAGACCTGTCTGAGGTCGAAATTG----AG
5915 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAA-T------TGAG
* *
5949 AAAGACCTGTCTTAGGTCGGAATAAAACTGAG
1 AAAGACCTGTCTGAGGTC-G----AAATTGAG
* *
5981 AAAGACCTGTCTGAAGCCGAAACTAAACTGAG
1 AAAGACCTGTCTGAGGTCGAAA-T----TGAG
* * *
6013 AAAGACCTGTTTGAGGTCGGAATTGAAATAT
1 AAAGACCTGTCTGAGGTCGAAATTG----AG
6044 AAAGACCTGTCTGAGGTCGAAATT
1 AAAGACCTGTCTGAGGTCGAAATT
6068 AAAAGCTGAG
Statistics
Matches: 842, Mismatches: 73, Indels: 212
0.75 0.06 0.19
Matches are distributed among these distances:
25 21 0.02
27 36 0.04
28 7 0.01
29 1 0.00
31 118 0.14
32 368 0.44
33 126 0.15
34 143 0.17
35 5 0.01
37 1 0.00
38 6 0.01
39 9 0.01
41 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (27 bp):
AAAGACCTGTCTGAGGTCGAAATTGAG
Found at i:5381 original size:129 final size:131
Alignment explanation
Indices: 5044--6127 Score: 1418
Period size: 129 Copynumber: 8.4 Consensus size: 131
5034 GTCGAAAGAT
* *
5044 AAAGACCCGTCTGAGGTCGAAATTGAAACTTG-GAAAGACCTGTCCGAGGTCGAAAT------TG
1 AAAGACCTGTCTGAGGTCGAAATT-AAAC-TGAGAAAGACCTGTCTGAGGTCGAAATAAAAGCTG
* * *
5102 AGAAAGACCTGTCCGAGGTCGGAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAATTAAAAGCT
64 AGAAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAAATAAAAGCT
5167 GAG
129 GAG
* *
5170 AAAGACCTGTTTGAGGTCGAAATTAAACTGAGAAAGACTTGTCTGAGGTCGAAATAAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAATTAAACTGAGAAAGACCTGTCTGAGGTCGAAATAAAAGCTGAG
* *
5235 AAAGACCTGTCTGAGGTCGAAATAAAGCTGAGAAAGACCTGCCTGAGGTC-GAAATAAAA-CTGA
66 AAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAAATAAAAGCTGA
5298 G
131 G
*
5299 AAAGACCTGTCTGAGGTC-AGAATTGAAA-T-ATAAAGACCTGTCTGAGGTCGAAATTAAAAGCT
1 AAAGACCTGTCTGAGGTCGA-AATT-AAACTGAGAAAGACCTGTCTGAGGTCGAAA-TAAAAGCT
* * * *
5361 GAGAAAGACCTGTCTAAGGTCGGAATAAAACTGAGAAAGACTTGTCTGAGGTCGGAATTAAAAGC
63 GAGAAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAAATAAAAGC
5426 TGAG
128 TGAG
5430 AAAGACCTGTCTGAGGTCGAAATTAAACTGAGAAAGACCTGTCTGAGGTCGAAATAAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAATTAAACTGAGAAAGACCTGTCTGAGGTCGAAATAAAAGCTGAG
* * * * *
5495 AAAGACCTGTGTGGGGTCGAAATAAAACTGAGAAAGACCTGTTTGAGGTCGGAATTGAAA--T-A
66 AAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAAATAAAAGCTGA
*
5557 T
131 G
* *
5558 AAACACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAGACCTGTCTGAGGTCGGAATAAAA-CTG
1 AAAGACCTGTCTGAGGTCGAAATT-AAA-CTGAGAAAGACCTGTCTGAGGTCGAAATAAAAGCTG
* * *
5622 AGAAAGACCTGTCTGAGGTCGAAATTAAACTGAGAAAGACCTGTCTGAGGTCGGAATTGAAA--T
64 AGAAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAAATAAAAGCT
*
5685 -AT
129 GAG
*
5687 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTAAGAAAGACCTGTCTGAGGTCGAAATTAAAAGCT
1 AAAGACCTGTCTGAGGTCGAAATT-AAA-CTGAGAAAGACCTGTCTGAGGTCGAAA-TAAAAGCT
* *
5752 GAGAAAGACCTGTTTGAGATCGAAATAAAACTGAGAAAGACCTGTCTGAGGTC-GAAATAAAAGC
63 GAGAAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAAATAAAAGC
5816 TGAG
128 TGAG
5820 AAAGACCTGTCTGAGGTCGAAA-TAAAGCTGAGAAAGACCTGTCTGAGGTCGAAATAAAA-CTGA
1 AAAGACCTGTCTGAGGTCGAAATTAAA-CTGAGAAAGACCTGTCTGAGGTCGAAATAAAAGCTGA
* * *
5883 GAAAGACCTGTCTGAGGTCGGAATTGAAA-T-ATAAAGACCTGTCTGAGGTC-GAAATTAAAAGC
65 GAAAGACCTGTCTGAGGTC-GAAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAAA-TAAAAGC
5945 TGAG
128 TGAG
* * * * *
5949 AAAGACCTGTCTTAGGTCGGAATAAAACTGAGAAAGACCTGTCTGAAGCCGAAACT-AAA-CTGA
1 AAAGACCTGTCTGAGGTCGAAATTAAACTGAGAAAGACCTGTCTGAGGTCGAAA-TAAAAGCTGA
* * * *
6012 GAAAGACCTGTTTGAGGTCGGAATTGAAA-T-ATAAAGACCTGTCTGAGGTC-GAAATTAAAAGC
65 GAAAGACCTGTCTGAGGTC-GAAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAAA-TAAAAGC
6074 TGAG
128 TGAG
* * *
6078 AAAGGCCTGTCTGAGGTCGGAATTGAACTGAGAAAGACCTGTCTGAGGTC
1 AAAGACCTGTCTGAGGTCGAAATTAAACTGAGAAAGACCTGTCTGAGGTC
6128 TGGAACTTCG
Statistics
Matches: 872, Mismatches: 60, Indels: 49
0.89 0.06 0.05
Matches are distributed among these distances:
124 2 0.00
125 26 0.03
126 22 0.03
128 70 0.08
129 398 0.46
130 81 0.09
131 224 0.26
132 26 0.03
133 23 0.03
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.21
Consensus pattern (131 bp):
AAAGACCTGTCTGAGGTCGAAATTAAACTGAGAAAGACCTGTCTGAGGTCGAAATAAAAGCTGAG
AAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAAATAAAAGCTGA
G
Found at i:5443 original size:228 final size:225
Alignment explanation
Indices: 5044--6132 Score: 1438
Period size: 228 Copynumber: 4.8 Consensus size: 225
5034 GTCGAAAGAT
* * *
5044 AAAGACCCGTCTGAGGTCGAAATTGAAACTTG-GAAAGACCTGTCCGAGGTCGAAATTG----AG
1 AAAGACCTGTCTGAGGTCGAAA-TAAAAC-TGAGAAAGACCTGTCTGAGGTCG-AATTGAAATAG
* *
5104 AAAGACCTGTCCGAGGTCGGAA-TAAAA-CTGAGAAAGACCTGTCTGAGGTCGGAATTAAAAGCT
63 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAGACCTGTCTGAGGTCGGAA-TAAAA-CT
* * * *
5167 GAGAAAGACCTGTTTGAGGTCGAAATTAAACTGAGAAAGACTTGTCTGAGGTC-GAAATAAAAGC
126 GAGAAAGACCTGTCTGAGGTCGGAATTAAACTGAGAAAGACCTGTCTGAGGTCGGAAATGAAA--
5231 TGAGAAAGACCTGTCTGAGGTCGAAA-T-AAAGCTGAG
189 T-AGAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAG
* *
5267 AAAGACCTGCCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCAGAATTGAAATATAA
1 AAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTC-GAATTGAAATAGAA
*
5332 AGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAGACCTGTCTAAGGTCGGAATAAAACTGAGA
65 AGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAGACCTGTCTGAGGTCGGAATAAAACTGAGA
* *
5397 AAGACTTGTCTGAGGTCGGAATTAAAAGCTGAGAAAGACCTGTCTGAGGTC-GAAATTAAACTGA
130 AAGACCTGTCTGAGGTCGGAATT-AAA-CTGAGAAAGACCTGTCTGAGGTCGGAAATGAAA-T-A
5461 GAAAGACCTGTCTGAGGTCGAAA-TAAAAGCTGAG
191 GAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAG
* * * *
5495 AAAGACCTGTGTGGGGTCGAAATAAAACTGAGAAAGACCTGTTTGAGGTCGGAATTGAAATATAA
1 AAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTC-GAATTGAAATAGAA
*
5560 ACACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAGACCTGTCTGAGGTCGGAATAAAACTGAGA
65 AGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAGACCTGTCTGAGGTCGGAATAAAACTGAGA
* * *
5625 AAGACCTGTCTGAGGTCGAAATTAAACTGAGAAAGACCTGTCTGAGGTCGGAATTGAAATATAAA
130 AAGACCTGTCTGAGGTCGGAATTAAACTGAGAAAGACCTGTCTGAGGTCGGAAATGAAATAGAAA
*
5690 GACCTGTCTGAGGTCGAAATTAAAAGCTAAG
195 GACCTGTCTGAGGTCGAAATTAAAAGCTGAG
* * * *
5721 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAGACCTGTTTGAGATCGAAATAAAACTGA
1 AAAGACCTGTCTGAGGTCGAAA-TAAAA-CTGAGAAAGACCTGTCTGAGGTCGAATTGAAA-T-A
* *
5786 GAAAGACCTGTCTGAGGTCGAAA-TAAAAGCTGAGAAAGACCTGTCTGAGGTCGAAATAAAGCTG
62 GAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAGACCTGTCTGAGGTCGGAATAAAACTG
* * * *
5850 AGAAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAATTGAAATAT
127 AGAAAGACCTGTCTGAGGTCGGAATTAAACTGAGAAAGACCTGTCTGAGGTCGGAAATGAAATAG
5915 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAG
192 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAG
* * * * *
5949 AAAGACCTGTCTTAGGTCGGAATAAAACTGAGAAAGACCTGTCTGAAGCCGAAACT-AAACTGAG
1 AAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCG-AATTGAAA-T-AG
* * * * *
6013 AAAGACCTGTTTGAGGTCGGAATTGAAA--T-ATAAAGACCTGTCTGAGGTCGAAATTAAAAGCT
63 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAGACCTGTCTGAGGTCGGAA-TAAAA-CT
* *
6075 GAGAAAGGCCTGTCTGAGGTCGGAATTGAACTGAGAAAGACCTGTCTGAGGTCTGGAA
126 GAGAAAGACCTGTCTGAGGTCGGAATTAAACTGAGAAAGACCTGTCTGAGGTC-GGAA
6133 CTTCGAAATC
Statistics
Matches: 791, Mismatches: 53, Indels: 40
0.89 0.06 0.05
Matches are distributed among these distances:
221 2 0.00
222 28 0.04
223 21 0.03
224 23 0.03
225 28 0.04
226 200 0.25
227 79 0.10
228 388 0.49
229 22 0.03
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (225 bp):
AAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGAATTGAAATAGAAA
GACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAGACCTGTCTGAGGTCGGAATAAAACTGAGAA
AGACCTGTCTGAGGTCGGAATTAAACTGAGAAAGACCTGTCTGAGGTCGGAAATGAAATAGAAAG
ACCTGTCTGAGGTCGAAATTAAAAGCTGAG
Found at i:5849 original size:357 final size:354
Alignment explanation
Indices: 5044--6127 Score: 1691
Period size: 357 Copynumber: 3.1 Consensus size: 354
5034 GTCGAAAGAT
* * *
5044 AAAGACCCGTCTGAGGTCGAAATTGAAACTTG-GAAAGACCTGTCCGAGGTCGAAAT----TGAG
1 AAAGACCTGTCTGAGGTCGAAA-TAAAAC-TGAGAAAGACCTGTCTGAGGTCGAAATAAACTGAG
* * * *
5104 AAAGACCTGTCCGAGGTCGGAATAAAACTGAGAAAGACCTGTCTGAGGTCGGAATTAAAAGCTGA
64 AAAGACCTGTCTGAGGTCGAAATAAAGCTGAGAAAGACCTGTCTGAGGTC-GAAATAAAA-CTGA
* * *
5169 GAAAGACCTGTTTGAGGTCGAAATT-AAACTGAGAAAGACTTGTCTGAGGTCGAAA-TAAAAGCT
127 GAAAGACCTGTTTGAGGTCGGAATTGAAA-T-ATAAAGACCTGTCTGAGGTCGAAATTAAAAGCT
* * * *
5232 GAGAAAGACCTGTCTGAGGTCGAAATAAAGCTGAGAAAGACCTGCCTGAGGTCGAAATAAAACTG
190 GAGAAAGACCTGTCTGAGGTCGGAATAAAACTGAGAAAGACCTGTCTGAGGTCGAAATTAAACTG
*
5297 AGAAAGACCTGTCTGAGGTCAGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTG
255 AGAAAGACCTGTCTGAGGTCGGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTG
*
5362 AGAAAGACCTGTCTAAGGTCGGAA-TAAAACTGAG
320 AGAAAGACCTGTCTGAGGTCGGAATTAAAACTGAG
* *
5396 AAAGACTTGTCTGAGGTCGGAATTAAAAGCTGAGAAAGACCTGTCTGAGGTCGAAATTAAACTGA
1 AAAGACCTGTCTGAGGTC-GAAATAAAA-CTGAGAAAGACCTGTCTGAGGTCGAAA-TAAACTGA
* *
5461 GAAAGACCTGTCTGAGGTCGAAATAAAAGCTGAGAAAGACCTGTGTGGGGTCGAAATAAAACTGA
63 GAAAGACCTGTCTGAGGTCGAAAT-AAAGCTGAGAAAGACCTGTCTGAGGTCGAAATAAAACTGA
*
5526 GAAAGACCTGTTTGAGGTCGGAATTGAAATATAAACACCTGTCTGAGGTCGAAATTAAAAGCTGA
127 GAAAGACCTGTTTGAGGTCGGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGA
5591 GAAAGACCTGTCTGAGGTCGGAATAAAACTGAGAAAGACCTGTCTGAGGTCGAAATTAAACTGAG
192 GAAAGACCTGTCTGAGGTCGGAATAAAACTGAGAAAGACCTGTCTGAGGTCGAAATTAAACTGAG
*
5656 AAAGACCTGTCTGAGGTCGGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTAAG
257 AAAGACCTGTCTGAGGTCGGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAG
*
5721 AAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAG
322 AAAGACCTGTCTGAGGTCGGAATTAAAA-CTGAG
* *
5755 AAAGACCTGTTTGAGATCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGAAATAAAAGCTGAG
1 AAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGAAAT-AAA-CTGAG
5820 AAAGACCTGTCTGAGGTCGAAATAAAGCTGAGAAAGACCTGTCTGAGGTCGAAATAAAACTGAGA
64 AAAGACCTGTCTGAGGTCGAAATAAAGCTGAGAAAGACCTGTCTGAGGTCGAAATAAAACTGAGA
*
5885 AAGACCTGTCTGAGGTCGGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAGA
129 AAGACCTGTTTGAGGTCGGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAGA
* * * *
5950 AAGACCTGTCTTAGGTCGGAATAAAACTGAGAAAGACCTGTCTGAAGCCGAAACTAAACTGAGAA
194 AAGACCTGTCTGAGGTCGGAATAAAACTGAGAAAGACCTGTCTGAGGTCGAAATTAAACTGAGAA
*
6015 AGACCTGTTTGAGGTCGGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAA
259 AGACCTGTCTGAGGTCGGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAA
* *
6080 AGGCCTGTCTGAGGTCGGAATT-GAACTGAG
324 AGACCTGTCTGAGGTCGGAATTAAAACTGAG
6110 AAAGACCTGTCTGAGGTC
1 AAAGACCTGTCTGAGGTC
6128 TGGAACTTCG
Statistics
Matches: 675, Mismatches: 42, Indels: 27
0.91 0.06 0.04
Matches are distributed among these distances:
352 22 0.03
353 26 0.04
354 1 0.00
355 21 0.03
356 24 0.04
357 460 0.68
358 77 0.11
359 44 0.07
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.21
Consensus pattern (354 bp):
AAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAAGACCTGTCTGAGGTCGAAATAAACTGAGAA
AGACCTGTCTGAGGTCGAAATAAAGCTGAGAAAGACCTGTCTGAGGTCGAAATAAAACTGAGAAA
GACCTGTTTGAGGTCGGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAA
GACCTGTCTGAGGTCGGAATAAAACTGAGAAAGACCTGTCTGAGGTCGAAATTAAACTGAGAAAG
ACCTGTCTGAGGTCGGAATTGAAATATAAAGACCTGTCTGAGGTCGAAATTAAAAGCTGAGAAAG
ACCTGTCTGAGGTCGGAATTAAAACTGAG
Done.