Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023217.1 Corchorus olitorius cultivar O-4 contig23250, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111938

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
187--281
45
2.2
43
90
7
149
37
24
5
32
1.78
1300--1447
73
2.0
74
85
3
201
39
6
16
37
1.76
3453--3498
21
2.2
21
84
7
58
26
15
17
41
1.88
8175--8435
30
8.6
30
87
2
299
33
17
18
30
1.94
10002--10087
42
2.0
42
95
0
154
39
15
6
38
1.74
10347--10479
21
6.3
21
91
0
203
33
22
15
28
1.95
10551--10635
21
4.1
20
85
8
107
34
24
14
27
1.94
10551--10635
42
2.0
42
88
4
127
34
24
14
27
1.94
10410--10801
143
2.7
142
88
0
559
33
21
14
30
1.93
10694--10778
21
4.0
21
90
0
134
32
22
14
30
1.93
11261--11421
43
3.8
43
86
8
231
43
25
10
20
1.84
11261--11420
84
1.9
84
94
2
286
43
25
10
20
1.83
24000--24201
43
4.8
42
89
6
311
42
26
9
21
1.84
25616--25812
96
2.1
96
94
0
340
23
29
24
22
1.99
28181--28223
17
2.5
17
78
14
52
58
4
32
4
1.39
29885--29913
2
14.5
2
100
0
58
48
0
0
51
1.00
42424--42448
3
8.3
3
100
0
50
0
32
0
68
0.90
46955--47011
21
2.8
20
76
5
62
35
15
12
36
1.85
103023--103066
23
1.9
23
86
9
63
63
6
2
27
1.31
106713--106795
42
2.0
42
92
0
139
46
15
6
31
1.70
106859--106970
56
2.0
56
98
1
217
40
1
24
33
1.66
107177--107214
7
5.4
7
100
0
76
31
0
13
55
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111874--111938
2
32.5
2
100
0
130
50
0
49
0
1.00

Tables:   1

The End!