Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023220.1 Corchorus olitorius cultivar O-4 contig23253, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41541

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1784--2112
178
1.8
178
84
1
444
34
16
15
34
1.90
2108--2567
236
2.0
228
88
5
681
42
10
14
32
1.80
4249--4315
24
2.8
23
82
13
73
53
23
14
7
1.66
4249--4308
24
2.5
24
89
5
86
53
25
13
8
1.67
4703--4964
107
2.5
106
89
2
377
42
9
7
40
1.66
5819--5894
16
4.8
16
75
6
82
40
38
13
7
1.73
7510--7542
15
2.1
17
88
11
52
42
36
12
9
1.74
8420--8468
25
2.0
25
84
8
64
40
0
0
59
0.98
8420--8469
22
2.3
21
81
18
59
42
0
0
58
0.98
9734--9776
21
2.0
21
95
0
77
58
11
2
27
1.46
15403--15428
8
3.2
8
100
0
52
84
0
0
15
0.62
20704--20736
5
6.6
5
92
0
57
81
3
0
15
0.80
21042--21197
77
2.0
78
83
3
199
42
14
7
34
1.75
32916--32972
23
2.5
23
91
0
87
24
19
21
35
1.96
32887--33007
58
2.1
58
80
0
134
26
17
18
38
1.92
33025--33056
16
2.0
16
93
0
55
53
0
0
46
1.00
33009--33056
19
2.5
19
83
10
62
47
0
0
52
1.00
33184--33218
18
1.9
18
88
0
52
28
5
11
54
1.59
33503--33661
52
3.0
52
82
1
183
11
17
13
57
1.65
34132--34254
22
5.6
22
79
8
108
33
5
17
43
1.73
34175--34524
22
15.8
22
74
10
220
39
9
16
34
1.81
34250--34344
49
2.0
48
91
2
154
41
7
15
35
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34132--34524
44
8.9
43
74
13
250
38
8
16
36
1.80
34133--34524
66
6.0
64
75
13
257
38
8
16
36
1.80
34630--34681
22
2.4
22
80
6
61
36
7
23
32
1.83
34642--34683
22
1.9
22
90
0
66
35
4
26
33
1.77
34670--34714
22
2.0
22
91
0
72
31
4
15
48
1.65
34758--34829
22
3.3
21
80
3
72
41
6
12
38
1.70
34758--34814
21
2.6
22
83
5
71
45
5
12
36
1.64
34758--34855
43
2.2
44
82
5
119
42
6
13
37
1.69
34895--34973
22
3.6
23
79
3
65
46
2
13
36
1.57
34922--35027
22
5.0
22
75
11
80
39
6
16
36
1.75
34918--35032
44
2.7
43
81
11
121
40
6
15
37
1.75
34976--35033
22
2.8
20
84
10
66
34
10
17
37
1.84
35140--35208
22
3.1
22
81
4
86
31
5
18
43
1.74
35202--35252
22
2.3
22
86
6
68
50
5
9
33
1.59
35290--35352
20
3.2
19
73
13
56
46
6
11
36
1.65
36227--36272
22
2.0
23
84
12
60
28
0
13
58
1.35
41162--41201
21
1.9
21
85
10
55
47
32
0
20
1.50

Tables:   1

The End!