Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023224.1 Corchorus olitorius cultivar O-4 contig23257, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70125

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6842--7107
134
2.0
131
89
3
408
50
2
9
38
1.47
6869--7115
131
1.9
133
88
4
356
51
1
10
36
1.45
7307--7406
30
3.4
28
76
9
94
44
8
10
38
1.68
7484--7539
26
2.2
26
87
3
78
30
17
17
33
1.94
11354--11388
18
1.9
18
88
0
52
22
5
14
57
1.59
12590--12651
31
2.0
31
96
0
115
16
17
25
40
1.90
30070--30670
52
11.6
52
89
3
912
35
12
21
29
1.91
31328--31401
24
3.1
23
80
16
80
52
17
10
18
1.73
33576--33655
31
2.5
31
78
7
90
36
20
10
33
1.86
34734--34760
2
13.5
2
100
0
54
0
48
0
51
1.00
44613--44641
14
2.1
14
100
0
58
20
20
13
44
1.85
48503--48930
47
8.1
57
81
11
361
50
6
20
23
1.70
48652--49302
47
13.4
47
82
6
717
50
6
19
23
1.70
48653--49302
148
4.4
148
87
2
909
50
6
19
23
1.70
48652--49302
195
3.4
188
85
5
798
50
6
19
23
1.70
49298--49415
22
5.4
22
82
10
129
56
7
22
13
1.62
57514--57583
25
2.9
25
74
19
76
10
34
17
38
1.83
62116--62225
53
2.1
53
98
0
211
50
17
8
24
1.73
63432--63467
18
2.1
17
89
5
54
2
13
11
72
1.23
63529--63557
13
2.2
13
100
0
58
37
13
13
34
1.85
68830--68867
15
2.4
16
91
4
60
15
2
13
68
1.32

Tables:   1

The End!