Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002323.1 Corchorus olitorius cultivar O-4 contig02323, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1217
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35


Found at i:530 original size:20 final size:20

Alignment explanation


    Indices: 507--606  Score: 200
    Period size: 20  Copynumber: 5.0  Consensus size: 20

        497 ATTATTCCTC

                                
        507 AAAAGATAGACAAGAGTTGA
          1 AAAAGATAGACAAGAGTTGA

                                
        527 AAAAGATAGACAAGAGTTGA
          1 AAAAGATAGACAAGAGTTGA

                                
        547 AAAAGATAGACAAGAGTTGA
          1 AAAAGATAGACAAGAGTTGA

                                
        567 AAAAGATAGACAAGAGTTGA
          1 AAAAGATAGACAAGAGTTGA

                                
        587 AAAAGATAGACAAGAGTTGA
          1 AAAAGATAGACAAGAGTTGA

        607 CTTATAGCCA


Statistics
Matches: 80,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   80  1.00

ACGTcount: A:0.55, C:0.05, G:0.25, T:0.15


Consensus pattern (20 bp):   
AAAAGATAGACAAGAGTTGA

Done.