Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023232.1 Corchorus olitorius cultivar O-4 contig23265, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22756

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5278--5406
27
4.8
27
86
3
181
18
38
21
20
1.93
7776--7960
32
5.8
32
82
3
221
32
23
18
25
1.97
7776--7960
96
1.9
96
85
2
255
32
23
18
25
1.97
7776--7971
64
3.1
64
86
2
252
33
22
18
25
1.97
7973--8105
65
2.0
64
83
8
162
36
16
15
31
1.91
12576--12621
3
15.7
3
95
4
85
32
0
0
67
0.91
12780--12812
16
2.1
16
94
0
57
24
9
24
42
1.83
12839--12873
2
17.5
2
100
0
70
48
0
0
51
1.00
16765--16791
12
2.2
12
100
0
54
37
0
7
55
1.28
19851--19896
24
1.9
24
90
0
74
34
19
19
26
1.96
19967--20056
45
2.0
45
84
0
117
18
20
21
40
1.92
20188--20227
18
2.2
18
86
0
53
2
5
12
80
0.98
20188--20221
6
5.7
6
92
0
59
0
2
14
82
0.79
20323--20364
21
1.9
23
85
9
61
35
4
7
52
1.50
20506--20537
16
2.0
16
100
0
64
37
18
12
31
1.88
21867--21917
24
2.1
25
88
3
77
72
3
5
17
1.20

Tables:   1

The End!