Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023235.1 Corchorus olitorius cultivar O-4 contig23268, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36170

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8460--8586
63
2.0
63
89
0
191
40
11
31
15
1.84
12704--12748
23
2.0
23
100
0
90
22
13
24
40
1.90
17469--17696
50
4.6
50
90
4
356
27
26
11
34
1.91
17710--17942
50
4.7
50
89
1
351
27
14
28
28
1.95
18027--18247
91
2.4
92
93
1
374
38
14
18
29
1.90
18243--18308
25
2.5
26
76
18
73
7
22
19
50
1.73
18649--18743
50
1.9
50
93
0
163
37
16
16
28
1.91
19340--19461
23
5.2
23
78
21
137
16
0
16
67
1.24
19341--19461
18
6.6
18
89
10
183
16
0
16
66
1.25
19340--19461
41
3.1
41
94
5
209
16
0
16
67
1.24
19734--19782
13
3.6
13
78
10
53
32
12
10
44
1.75
19837--19876
17
2.4
17
78
0
53
15
12
0
72
1.12
21342--21383
15
2.7
15
96
3
75
66
14
7
11
1.43
27199--27234
10
3.6
10
92
0
54
86
2
0
11
0.68
31774--31820
11
4.7
10
80
17
53
40
6
21
31
1.78
31785--31820
19
1.9
18
88
5
54
41
2
22
33
1.68
35223--35272
21
2.4
21
89
0
82
22
34
16
28
1.95

Tables:   1

The End!