Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023237.1 Corchorus olitorius cultivar O-4 contig23270, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2446
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31


Found at i:466 original size:21 final size:21

Alignment explanation


    Indices: 442--491  Score: 66
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        432 TTGCCGCTGG

                                  
        442 GCGCCCAGGCGA-AATACCTCA
          1 GCGCCCAGGCGACAA-ACCTCA

                           **    
        463 GCGCCCAGGCGACAAGGCTCA
          1 GCGCCCAGGCGACAAACCTCA

                    
        484 GCGCCCAG
          1 GCGCCCAG

        492 CTCGATCCCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  21   24  0.92
  22    2  0.08

ACGTcount: A:0.24, C:0.40, G:0.30, T:0.06


Consensus pattern (21 bp):   
GCGCCCAGGCGACAAACCTCA
Done.