Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023238.1 Corchorus olitorius cultivar O-4 contig23271, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19990

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4057--4089
14
2.4
14
90
10
50
60
24
0
15
1.35
5106--5198
32
2.9
32
88
0
132
24
25
22
26
2.00
6675--6743
27
2.5
28
83
4
86
15
17
26
40
1.89
10959--11009
23
2.2
24
86
6
70
56
5
9
27
1.54
11528--11614
8
10.1
8
76
14
75
2
1
28
67
1.10
11528--11632
35
3.0
35
97
0
201
2
0
27
68
1.10
14074--14408
54
6.2
53
81
6
284
31
22
19
26
1.97
14077--14417
108
3.2
107
80
5
321
32
22
18
26
1.97
14412--14533
54
2.3
54
91
1
192
28
19
20
31
1.97
14499--14910
35
11.6
35
88
4
558
41
18
12
26
1.86
14890--15227
161
2.1
163
84
3
441
31
22
17
27
1.97
14909--15240
54
6.2
53
79
4
335
31
22
17
28
1.97
15214--15469
54
4.8
54
85
2
313
37
22
14
26
1.92
14936--15275
108
3.2
107
76
7
305
32
22
17
27
1.96
15214--15461
106
2.3
106
88
4
349
37
21
14
26
1.92
15225--15472
107
2.3
106
88
3
347
36
21
15
26
1.93
16573--16653
39
2.1
39
85
0
108
34
13
14
37
1.86
16832--16893
32
1.9
32
83
6
81
6
22
1
69
1.20
19858--19952
8
12.6
8
72
18
71
66
0
10
23
1.22
19858--19927
4
17.0
4
74
11
61
71
0
7
21
1.09

Tables:   1

The End!