Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023240.1 Corchorus olitorius cultivar O-4 contig23273, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30308

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5172--5227
28
2.0
27
82
3
67
17
26
21
33
1.96
5194--5246
27
2.0
27
92
0
88
20
22
24
32
1.98
7333--7358
11
2.4
11
100
0
52
7
15
7
69
1.35
8119--8160
15
2.7
15
85
3
57
11
11
14
61
1.56
8119--8157
16
2.4
16
87
8
53
12
12
12
61
1.57
8573--8625
23
2.4
23
90
6
83
22
11
13
52
1.71
10648--10725
39
2.0
39
100
0
156
20
17
20
41
1.91
13312--13491
93
1.9
93
89
6
283
37
17
16
28
1.92
13957--14008
25
2.0
25
85
10
70
1
50
3
44
1.31
16789--17009
60
3.7
59
82
7
245
32
15
11
39
1.84
16848--17009
59
2.7
59
87
2
182
33
16
11
38
1.85
18615--18640
11
2.4
11
100
0
52
7
15
7
69
1.35
19400--19441
15
2.7
15
92
3
66
9
7
16
66
1.42
21631--21683
27
2.0
27
88
3
81
39
26
16
16
1.91
30173--30308
29
4.6
29
81
6
139
44
22
13
18
1.85
30172--30308
59
2.3
60
85
1
177
44
22
14
18
1.86

Tables:   1

The End!