Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023245.1 Corchorus olitorius cultivar O-4 contig23278, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17973

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1843--1872
12
2.4
13
88
11
53
13
6
13
66
1.43
7514--7999
151
3.2
151
92
0
783
30
16
33
19
1.94
9767--9819
11
4.8
11
75
6
54
50
1
0
47
1.12
9769--9817
19
2.6
18
77
6
53
53
2
0
44
1.12
13420--13454
17
2.2
17
90
10
56
8
17
37
37
1.80
14255--14298
21
2.0
22
82
4
54
45
2
2
50
1.27
15077--15121
16
2.7
17
82
6
65
6
13
37
42
1.70
16157--16370
25
7.8
26
68
16
128
28
20
2
49
1.61
16216--16370
25
5.9
25
75
11
132
29
19
1
49
1.56
16216--16370
53
3.0
52
77
11
154
29
19
1
49
1.56
16352--16526
52
3.4
51
89
4
260
32
20
1
46
1.58
16393--16480
27
3.3
26
70
19
83
37
20
0
42
1.52
16442--16611
70
2.4
70
90
0
268
30
19
1
49
1.56
16541--16665
62
2.0
64
84
6
166
29
17
0
52
1.51
16564--16624
18
3.3
18
90
2
86
29
16
0
54
1.43
16580--16713
47
2.9
45
86
5
189
29
14
1
54
1.50
16671--16712
19
2.2
19
91
8
68
28
14
0
57
1.38
17440--17488
20
2.5
20
96
0
89
46
32
16
4
1.65

Tables:   1

The End!