Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002325.1 Corchorus olitorius cultivar O-4 contig02325, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2291
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32


Found at i:1843 original size:15 final size:16

Alignment explanation


    Indices: 1819--1861  Score: 54
    Period size: 15  Copynumber: 2.8  Consensus size: 16

       1809 TAATAATGGT

                 *          
       1819 ATTATAATTATTAA-A
          1 ATTATTATTATTAATA

            *               
       1834 CTTATTATTA-TAATA
          1 ATTATTATTATTAATA

                         
       1849 ATTATTATTATTA
          1 ATTATTATTATTA

       1862 GTGGTATGTA


Statistics
Matches: 23,  Mismatches: 3, Indels: 3
        0.79            0.10        0.10

Matches are distributed among these distances:
  14    3  0.13
  15   18  0.78
  16    2  0.09

ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53


Consensus pattern (16 bp):   
ATTATTATTATTAATA
Done.