Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023251.1 Corchorus olitorius cultivar O-4 contig23284, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80496

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
302--556
125
2.0
127
88
7
383
50
2
9
37
1.48
6871--6903
2
16.5
2
100
0
66
51
0
0
48
1.00
8806--8847
19
2.3
18
88
8
59
78
2
19
0
0.86
8888--8922
17
2.0
18
94
5
63
77
5
17
0
0.96
26571--26605
10
3.4
10
88
7
52
62
0
0
37
0.95
26845--26902
3
20.3
3
86
10
86
32
0
1
65
1.03
28663--28687
13
1.9
13
100
0
50
56
0
0
44
0.99
29525--29565
21
1.9
22
85
5
57
43
29
17
9
1.80
30573--30616
23
1.9
23
81
9
54
59
0
11
29
1.32
31534--31578
22
2.0
23
86
4
65
35
13
4
46
1.63
31667--32067
44
8.8
44
69
16
122
37
15
10
37
1.81
31614--31926
22
14.1
22
70
15
132
37
17
10
35
1.83
31848--31926
23
3.5
22
81
8
88
36
17
7
37
1.79
31944--32086
22
6.6
22
73
15
102
34
15
9
39
1.80
31939--32066
44
2.9
41
81
13
141
36
14
9
39
1.79
32168--32293
22
5.7
22
78
8
123
32
13
11
42
1.79
32190--32293
44
2.4
44
80
0
136
31
14
10
43
1.79
32166--32317
66
2.3
66
76
5
155
34
13
11
40
1.80
32299--32360
25
2.6
24
83
14
76
33
14
12
38
1.84
32545--32724
68
2.7
67
79
10
174
35
15
10
38
1.82
32545--32799
22
11.5
22
75
11
182
36
16
10
37
1.83
33238--33276
13
2.9
13
82
17
53
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33244--33276
15
2.4
14
90
10
50
48
0
0
51
1.00
34758--34793
17
2.1
17
89
0
54
38
19
11
30
1.86
35989--36311
178
1.8
178
89
4
508
35
16
14
33
1.89
35979--36361
178
2.1
177
84
5
504
37
15
14
32
1.88
38251--38290
16
2.4
17
87
8
64
67
10
0
22
1.20
54963--54999
3
12.3
3
100
0
74
67
0
32
0
0.91
59550--59621
27
2.6
28
80
4
92
38
22
1
37
1.63
67522--67566
16
2.9
16
84
12
58
51
6
0
42
1.28
67774--67810
18
2.0
18
89
5
56
78
0
18
2
0.87
67865--67898
17
2.0
18
88
11
54
47
2
5
44
1.42
68228--68274
23
2.0
24
83
4
60
48
6
12
31
1.66
74468--74562
45
2.1
46
84
2
120
42
17
17
22
1.90
75496--75575
21
3.5
24
70
25
66
57
2
2
37
1.26
76064--76215
74
2.0
75
98
1
297
32
7
6
53
1.56
76451--76608
53
3.0
52
89
5
230
30
10
13
46
1.76
77470--77588
57
2.1
57
95
0
220
42
23
5
29
1.75
79007--79070
28
2.3
28
88
0
92
31
17
17
34
1.93

Tables:   1

The End!