Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023253.1 Corchorus olitorius cultivar O-4 contig23286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2541
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33


Found at i:1186 original size:3 final size:3

Alignment explanation


    Indices: 1172--1212  Score: 57
    Period size: 3  Copynumber: 14.0  Consensus size: 3

       1162 CCGGCTACCG

                  *                                 *              
       1172 GAA GAT GAA GAA GAA GAA GAA GAA GAA GAA AAA GAA -AA GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA

       1213 AAAAAAAAAA


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
   2    2  0.06
   3   31  0.94

ACGTcount: A:0.68, C:0.00, G:0.29, T:0.02


Consensus pattern (3 bp):   
GAA

Found at i:1371 original size:14 final size:15

Alignment explanation


    Indices: 1352--1380  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       1342 AAAAAAAAAA

                           
       1352 AAGAGAAG-AGAAAG
          1 AAGAGAAGAAGAAAG

                           
       1366 AAGAGAAGAAGAAAG
          1 AAGAGAAGAAGAAAG

       1381 GAAAAAGAGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    8  0.57
  15    6  0.43

ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00


Consensus pattern (15 bp):   
AAGAGAAGAAGAAAG
Done.