Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023254.1 Corchorus olitorius cultivar O-4 contig23287, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1142
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30


Found at i:671 original size:40 final size:40

Alignment explanation


    Indices: 626--712  Score: 129
    Period size: 40  Copynumber: 2.2  Consensus size: 40

        616 TGCCTGGCGT

                      *                             
        626 GGCCCAAGCGTGCCAGGCCAAGCACACTGGGCCAGCGCGC
          1 GGCCCAAGCGCGCCAGGCCAAGCACACTGGGCCAGCGCGC

                  *             *  * *              
        666 GGCCCAGGCGCGCCAGGCCAGGCGCGCTGGGCCAGCGCGC
          1 GGCCCAAGCGCGCCAGGCCAAGCACACTGGGCCAGCGCGC

                   
        706 GGCCCAA
          1 GGCCCAA

        713 CTGGCTTGGC


Statistics
Matches: 41,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  40   41  1.00

ACGTcount: A:0.16, C:0.41, G:0.39, T:0.03


Consensus pattern (40 bp):   
GGCCCAAGCGCGCCAGGCCAAGCACACTGGGCCAGCGCGC
Done.