Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023261.1 Corchorus olitorius cultivar O-4 contig23294, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7587
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34


Found at i:887 original size:22 final size:21

Alignment explanation


    Indices: 862--902  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        852 ACTGAAAAAG

                                  
        862 TAATAAAGGATATAAAAAAACA
          1 TAAT-AAGGATATAAAAAAACA

                  * *          
        884 TAATAATGCTATAAAAAAA
          1 TAATAAGGATATAAAAAAA

        903 TAAGTAACCT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   13  0.76
  22    4  0.24

ACGTcount: A:0.66, C:0.05, G:0.07, T:0.22


Consensus pattern (21 bp):   
TAATAAGGATATAAAAAAACA
Done.