Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023264.1 Corchorus olitorius cultivar O-4 contig23297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19740

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
573--636
2
31.5
2
84
9
85
46
3
1
48
1.27
654--715
31
2.0
31
90
0
97
32
24
4
38
1.76
752--921
84
2.0
85
93
1
288
32
12
2
52
1.52
2420--2457
2
19.0
2
94
0
67
50
2
0
47
1.15
9275--9306
12
2.7
12
100
0
64
28
0
0
71
0.86
9342--9384
15
3.0
15
87
12
56
25
2
0
72
0.97
9342--9372
13
2.4
13
100
0
62
25
0
0
74
0.82
10742--10774
12
2.7
12
95
4
57
3
12
0
84
0.72
10741--10774
13
2.6
13
86
13
52
2
11
0
85
0.71
12517--12604
16
5.5
15
77
10
86
5
17
36
40
1.73
12521--12604
32
2.6
32
83
7
100
5
16
34
42
1.73
12563--12686
55
2.3
55
89
0
185
10
16
35
37
1.84
13642--13685
16
2.8
16
85
0
61
11
15
36
36
1.84
17854--17908
27
2.0
28
89
6
87
34
9
12
43
1.74

Tables:   1

The End!