Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023265.1 Corchorus olitorius cultivar O-4 contig23298, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1968
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31


Found at i:908 original size:15 final size:16

Alignment explanation


    Indices: 880--910  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        870 ATCTTTTTAA

                            
        880 TTTTCCTTGCATTATT
          1 TTTTCCTTGCATTATT

                            
        896 TTTTCCTTG-ATTATT
          1 TTTTCCTTGCATTATT

        911 GCTTTGATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    6  0.40
  16    9  0.60

ACGTcount: A:0.13, C:0.16, G:0.06, T:0.65


Consensus pattern (16 bp):   
TTTTCCTTGCATTATT
Done.