Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023267.1 Corchorus olitorius cultivar O-4 contig23300, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4599
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:1371 original size:27 final size:28

Alignment explanation


    Indices: 1327--1380  Score: 74
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       1317 TTAACCTGAT

                       *                
       1327 TATTTATCTTGGTA-TTTTATGATTTCA
          1 TATTTATCTTGATATTTTTATGATTTCA

                      *  *             
       1354 TATTTATCTTTATGTTTTTATGATTTC
          1 TATTTATCTTGATATTTTTATGATTTC

       1381 TAATTGATTT


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  27   11  0.48
  28   12  0.52

ACGTcount: A:0.20, C:0.07, G:0.09, T:0.63


Consensus pattern (28 bp):   
TATTTATCTTGATATTTTTATGATTTCA

Found at i:1844 original size:24 final size:25

Alignment explanation


    Indices: 1810--1860  Score: 68
    Period size: 24  Copynumber: 2.1  Consensus size: 25

       1800 ATTGGAGTAT

                        *  *         
       1810 TTATTTATCTTGTTTCTTAATTTTA
          1 TTATTTATCTTGCTTATTAATTTTA

                              *      
       1835 TTATTT-TCTTGCTTATTTATTTTA
          1 TTATTTATCTTGCTTATTAATTTTA

              
       1859 TT
          1 TT

       1861 GTTACTCTTT


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  24   17  0.74
  25    6  0.26

ACGTcount: A:0.18, C:0.08, G:0.04, T:0.71


Consensus pattern (25 bp):   
TTATTTATCTTGCTTATTAATTTTA
Done.