genome.fa.s23272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023272.1 Corchorus olitorius cultivar O-4 contig23305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78868

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114--1367	137	1.9	138	90	4	419	42	11	5	40	1.63
1919--2470	276	2.0	276	92	0	924	26	29	14	29	1.95
7994--8073	21	3.9	21	83	12	103	45	3	5	46	1.43
8006--8068	18	3.3	18	77	8	63	42	4	4	47	1.45
8003--8059	18	3.0	18	92	7	87	42	5	5	47	1.48
14598--14767	31	5.5	31	80	0	160	31	22	25	21	1.98
14617--14767	62	2.4	62	82	2	187	33	22	24	19	1.97
27990--28107	56	2.1	56	98	0	227	32	26	13	27	1.94
28129--28180	24	2.2	23	86	10	70	42	25	11	21	1.86
28342--28434	42	2.2	42	90	1	141	33	32	15	19	1.92
32116--32192	23	2.8	29	68	22	76	36	3	16	42	1.67
42793--42832	15	2.6	16	88	4	55	15	10	12	62	1.54
42994--43078	28	3.0	28	86	8	118	17	12	25	43	1.85
43191--43250	26	2.3	26	97	0	111	23	10	10	56	1.62
51471--51523	21	2.5	21	96	0	97	43	20	0	35	1.52
51900--51937	19	2.0	20	85	15	53	28	5	2	63	1.30
52104--52335	22	10.5	21	73	8	149	35	9	17	36	1.83
52100--52317	66	3.3	66	83	5	215	33	10	18	37	1.84
52336--52378	22	2.0	22	86	9	61	41	9	18	30	1.82
52369--52761	22	17.5	22	68	14	99	39	9	16	34	1.81
52542--52757	44	4.9	43	71	12	134	42	11	14	31	1.80
52596--52760	88	1.9	88	86	5	235	44	9	13	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52860--53330	22	21.7	22	70	12	199	38	10	15	35	1.81
52775--53325	44	12.8	43	67	15	191	38	9	15	35	1.81
53118--53204	43	2.0	45	84	8	117	29	11	19	39	1.87
53225--53286	21	2.9	22	82	4	81	53	6	11	29	1.61
53449--53517	3	22.3	3	97	2	120	34	0	0	65	0.93
54389--54423	18	1.9	18	94	0	61	51	11	8	28	1.67
54549--54588	22	1.9	20	90	10	62	47	0	0	52	1.00
54570--54599	15	2.1	14	93	6	51	60	0	0	40	0.97
54621--54695	35	2.1	35	90	4	116	41	17	20	21	1.90
56772--56797	1	26.0	1	100	0	52	0	0	0	100	0.00
59125--59192	31	2.3	31	89	5	104	41	29	16	13	1.86
59265--59312	23	2.1	23	100	0	96	33	12	12	41	1.80
72425--72450	12	2.2	12	100	0	52	46	0	7	46	1.31
74632--74669	3	12.7	3	100	0	76	68	0	0	31	0.90
77818--77880	31	2.0	31	96	0	117	44	22	14	19	1.86

Tables:   1

The End!