Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023273.1 Corchorus olitorius cultivar O-4 contig23306, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27790

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4660--4721
31
2.0
31
90
0
97
17
45
1
35
1.59
7311--7341
15
2.1
15
93
0
53
38
16
19
25
1.92
12336--12470
26
5.2
25
70
15
80
17
19
3
59
1.52
12390--12470
27
3.1
26
81
11
103
16
18
3
61
1.48
12458--12532
34
2.2
34
95
0
132
25
17
2
54
1.56
12605--12815
7
29.7
7
69
20
91
19
23
2
53
1.58
12601--12904
42
8.0
35
72
17
161
21
21
4
52
1.63
12577--12685
21
5.2
21
79
12
109
22
22
4
51
1.66
12605--12893
76
3.7
76
80
10
302
20
22
3
53
1.61
12598--12921
21
15.2
21
73
14
123
21
21
4
52
1.64
12846--12928
35
2.3
35
93
2
139
25
18
4
51
1.65
12577--12933
78
4.6
81
74
15
256
21
21
4
52
1.63
12986--13015
15
2.1
15
93
6
53
26
20
0
53
1.46
12967--13016
22
2.3
22
82
6
57
26
18
2
54
1.54
22105--22190
43
2.0
43
100
0
172
37
23
18
20
1.94
27045--27110
30
2.2
30
83
2
78
33
18
12
36
1.88

Tables:   1

The End!