Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023275.1 Corchorus olitorius cultivar O-4 contig23308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49552

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1143--1294
76
2.0
76
81
7
175
17
30
28
23
1.97
4002--4055
19
2.6
21
77
19
60
38
18
3
38
1.69
4899--4944
20
2.2
21
85
14
60
32
10
4
52
1.56
5604--5650
24
2.0
24
82
0
58
70
4
12
12
1.31
6668--6745
33
2.4
33
97
0
147
32
19
8
39
1.82
17161--17248
43
2.1
42
82
6
106
34
17
9
39
1.81
17519--17561
3
14.3
3
100
0
86
32
0
0
67
0.91
17520--17585
9
7.3
9
91
3
50
39
1
0
59
1.07
18315--18378
6
10.8
6
76
15
53
46
18
1
32
1.59
21644--21687
14
3.1
14
83
12
54
61
2
11
25
1.41
22579--22622
18
2.4
19
81
11
56
40
0
25
34
1.56
29795--29829
15
2.3
15
95
0
61
62
22
0
14
1.31

Tables:   1

The End!