Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023276.1 Corchorus olitorius cultivar O-4 contig23309, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31035

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
762--798
16
2.3
16
90
0
56
89
5
0
5
0.60
738--798
9
6.6
9
76
16
54
83
3
0
13
0.76
1877--1923
19
2.5
19
89
3
69
46
17
10
25
1.79
2353--2472
16
7.7
15
74
13
91
9
13
37
40
1.76
2353--2472
47
2.5
48
75
10
113
9
13
37
40
1.76
2462--2517
23
2.4
23
84
0
76
5
19
44
30
1.73
3475--3524
23
2.2
23
92
0
82
4
26
46
24
1.70
3486--3527
6
7.2
6
83
5
50
2
26
47
23
1.64
3986--4075
44
2.0
44
89
0
135
23
10
15
51
1.73
6576--6679
51
2.0
51
83
7
131
21
20
13
45
1.85
11262--11304
21
2.0
21
86
4
59
16
18
48
16
1.81
11373--11466
42
2.2
42
86
0
125
12
22
47
17
1.81
11447--11483
10
3.7
10
100
0
74
8
32
51
8
1.61
15673--15708
19
1.9
18
88
5
54
30
22
5
41
1.76
15672--15720
11
4.8
11
80
12
52
32
20
8
38
1.82
16777--16805
9
3.2
9
100
0
58
24
0
0
75
0.80
18231--18289
19
3.3
17
76
7
55
69
1
0
28
0.98
19062--19189
63
2.0
63
93
0
220
21
21
16
40
1.91
20553--20578
1
26.0
1
100
0
52
0
0
0
100
0.00
22741--22791
17
3.1
16
83
8
66
35
19
21
23
1.96

Tables:   1

The End!