Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023278.1 Corchorus olitorius cultivar O-4 contig23311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87422

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
333--370
15
2.5
15
95
4
67
13
13
13
60
1.59
768--834
24
2.8
24
88
2
91
46
10
11
31
1.75
768--837
23
3.0
22
88
12
97
44
10
11
34
1.74
3948--4002
21
2.6
21
88
0
74
18
45
21
14
1.85
7252--7289
15
2.5
15
91
4
58
13
10
13
63
1.53
18812--19321
254
2.0
255
98
0
986
29
22
14
34
1.93
22957--23035
32
2.5
32
93
0
131
27
24
18
29
1.98
23288--23376
45
2.0
45
100
0
178
29
30
22
17
1.97
23571--23598
14
2.0
14
100
0
56
64
21
0
14
1.29
26889--27185
134
2.2
134
89
3
449
28
18
15
37
1.91
36667--36725
30
1.9
31
89
3
93
37
8
15
38
1.78
44218--44262
20
2.2
20
84
4
54
13
11
8
66
1.44
53913--53948
15
2.5
14
90
4
54
72
0
25
2
0.98
54395--54445
7
7.6
7
91
4
70
62
1
15
19
1.41
54738--54767
9
3.3
9
90
0
51
86
13
0
0
0.57
55727--55981
123
2.1
123
96
0
474
29
19
15
35
1.92
55850--56174
145
2.2
146
95
0
571
28
21
16
32
1.96
56224--57327
40
27.7
40
86
5
1396
32
20
10
36
1.87
56268--57306
399
2.6
398
90
2
1595
32
20
10
37
1.86
57740--57801
13
4.8
13
75
0
61
40
17
8
33
1.79
57742--57792
26
2.0
26
92
0
84
41
17
7
33
1.79
62149--62275
59
2.1
60
85
7
168
40
10
14
34
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62208--62367
68
2.3
68
85
1
212
36
12
17
33
1.87
62208--62364
33
4.6
34
73
12
133
37
12
16
33
1.87
62690--62908
33
6.4
33
71
10
136
42
11
15
30
1.83
62713--62909
36
5.7
35
71
12
113
42
12
15
28
1.84
62706--62939
104
2.2
105
79
3
258
42
11
15
30
1.83
62706--62939
35
6.7
35
68
9
138
42
11
15
30
1.83
65189--65245
29
2.0
29
86
6
80
45
8
19
26
1.79
69260--69303
21
2.1
21
86
0
61
13
13
18
54
1.71
76245--76278
9
3.9
9
96
3
61
8
32
0
58
1.29
76461--76499
20
2.0
20
90
10
62
7
5
30
56
1.49
76847--76904
30
2.0
29
93
3
98
46
0
6
46
1.29
78375--78500
65
1.9
65
85
3
173
39
27
14
18
1.89
79719--79767
25
2.0
24
84
11
64
22
8
6
63
1.44
84163--84202
15
2.6
15
84
4
53
67
12
7
12
1.41
86567--86799
117
2.0
117
85
1
315
47
3
14
34
1.61

Tables:   1

The End!