Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023284.1 Corchorus olitorius cultivar O-4 contig23317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49054

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
574--598
11
2.3
11
100
0
50
8
0
28
64
1.22
6299--6325
2
13.5
2
100
0
54
48
0
0
51
1.00
7893--7951
27
2.2
27
93
3
102
37
16
20
25
1.93
13170--13267
27
3.6
27
97
0
187
15
18
29
36
1.91
13173--13326
54
2.9
53
83
7
177
17
16
27
38
1.91
17248--17304
27
2.1
27
100
0
114
24
12
24
38
1.90
20572--20619
11
4.7
11
80
12
50
39
10
20
29
1.86
21988--22029
15
2.7
15
96
3
75
11
7
14
66
1.43
29906--29956
25
2.0
25
100
0
102
31
25
15
27
1.96
34780--34829
22
2.3
21
76
6
55
36
0
52
12
1.39
42877--42918
15
2.6
16
77
7
50
42
35
14
7
1.73
42851--42921
32
2.2
32
85
7
92
42
33
14
9
1.78
43314--43366
28
2.0
26
88
7
79
50
1
7
39
1.41
46295--46766
241
2.0
241
83
2
599
36
13
9
39
1.78
46270--46770
121
4.1
122
84
2
566
37
13
10
38
1.79

Tables:   1

The End!