Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023287.1 Corchorus olitorius cultivar O-4 contig23320, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4535
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.35


Found at i:2828 original size:2 final size:2

Alignment explanation


    Indices: 2821--2857  Score: 51
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       2811 TTCGTATTTT

                                 *                                    
       2821 TA TA TA TA -A TA TA GA TA TA TA TA TA TA TA TA -A TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       2858 TTATTTAAGT


Statistics
Matches: 31,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
   1    2  0.06
   2   29  0.94

ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46


Consensus pattern (2 bp):   
TA

Found at i:3701 original size:18 final size:17

Alignment explanation


    Indices: 3672--3722  Score: 59
    Period size: 17  Copynumber: 2.9  Consensus size: 17

       3662 GCCACGTCAA

                               
       3672 ATTTTTTATAAAAAAAATT
          1 ATTTTTT-TAAAAAAAA-T

                          *  
       3691 ATTTTTTT-AAAAATAT
          1 ATTTTTTTAAAAAAAAT

                            
       3707 ATATTTTTTAAAAAAA
          1 AT-TTTTTTAAAAAAA

       3723 TTTGGGTGAG


Statistics
Matches: 28,  Mismatches: 2, Indels: 5
        0.80            0.06        0.14

Matches are distributed among these distances:
  16    3  0.11
  17   12  0.43
  18    6  0.21
  19    7  0.25

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (17 bp):   
ATTTTTTTAAAAAAAAT
Done.