Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023290.1 Corchorus olitorius cultivar O-4 contig23323, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86762

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--114
3
37.3
3
100
0
224
33
0
0
66
0.92
2255--2285
2
15.5
2
100
0
62
51
0
0
48
1.00
8008--8065
28
2.1
27
96
3
107
46
15
13
24
1.82
8032--8152
35
3.6
34
90
6
185
52
12
14
21
1.74
8032--8152
34
3.6
35
89
6
180
52
12
14
21
1.74
15130--15191
28
2.2
28
100
0
124
25
24
17
32
1.97
15478--15543
32
2.1
32
100
0
132
40
9
21
28
1.83
18695--18784
3
29.7
3
82
6
94
71
0
1
27
0.94
18694--18784
14
6.9
13
86
10
98
71
0
1
27
0.93
21373--21410
19
2.0
19
100
0
76
36
26
0
36
1.57
30592--30655
33
1.9
33
90
6
103
42
10
20
26
1.85
30754--30813
33
1.9
31
86
10
86
36
8
25
30
1.85
31266--31310
13
3.2
13
84
12
54
62
2
0
35
1.08
33207--33235
2
14.5
2
100
0
58
51
0
0
48
1.00
38863--38918
29
1.9
29
85
7
78
42
3
7
46
1.48
40121--40146
2
13.0
2
100
0
52
50
0
0
50
1.00
42731--42887
78
2.0
78
98
0
305
20
24
19
35
1.95
42969--43021
24
2.2
24
100
0
106
30
11
11
47
1.74
43743--43804
30
2.1
30
96
0
115
45
4
24
25
1.73
44800--45038
132
1.8
129
83
4
318
34
13
20
30
1.92
45729--45920
96
2.0
96
96
0
357
41
10
29
17
1.84
49277--49521
122
2.0
122
91
0
402
35
21
8
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50449--50490
16
2.6
17
77
11
52
35
28
16
19
1.93
51156--51202
14
3.4
14
70
5
51
59
2
8
29
1.39
51018--51321
149
2.0
148
95
2
547
53
3
8
34
1.49
54448--54472
2
12.5
2
100
0
50
52
0
48
0
1.00
59522--59652
67
2.0
67
87
3
192
34
25
20
19
1.96
63574--63604
2
15.5
2
100
0
62
0
0
48
51
1.00
68309--68333
1
25.0
1
100
0
50
0
0
0
100
0.00
77686--77739
27
2.0
28
88
3
83
35
11
7
46
1.67
77636--82362
988
4.8
986
90
3
6779
30
15
17
36
1.92
79966--80019
27
2.0
27
96
0
99
31
29
12
25
1.93
82589--82648
29
2.0
30
87
6
86
38
8
18
35
1.81
84561--84593
13
2.5
13
90
0
57
6
6
12
75
1.16

Tables:   1

The End!